PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010537831.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

NAC

Protein Properties

Length: 350aa MW: 40165.5 Da PI: 7.2693

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010537831.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.9	1.6e-52	18	147	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrFhPt+eel+ +yLkkkv+ + ++l +vi+evd++k+ePwdL++ +v + ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk++ XP_010537831.1 18 VPPGFRFHPTEEELLYYYLKKKVSYEAIDL-DVIREVDLNKLEPWDLKEkcRVGSgPQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKSI 111 69**************************.9***********952444443556******************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++++gl+ktLvfy+grap+g+kt+W+mheyrl XP_010537831.1 112 HLGSSKKIGLRKTLVFYTGRAPHGQKTEWIMHEYRL 147 ********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.06E-57	14	167	IPR003441	NAC domain
PROSITE profile	PS51005	57.352	18	167	IPR003441	NAC domain
Pfam	PF02365	2.8E-27	19	147	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MEIGSSSTSL SGGGQLLVPP GFRFHPTEEE LLYYYLKKKV SYEAIDLDVI REVDLNKLEP 60 WDLKEKCRVG SGPQNEWYFF SHKDKKYPTG TRTNRATAAG FWKATGRDKS IHLGSSKKIG 120 LRKTLVFYTG RAPHGQKTEW IMHEYRLDDS ENEIQEDGWV VCRVFKKKNH FRGFHQDQED 180 HSHHYMSTDT DHHHYDHHHH NINPNPNNPS SFPHPLDHHR HHHTTHQQPL YDFANTFDHN 240 SMHLPQLFSP ESAMAAHPFV SLNTTDLQCS QNLLRLTSNS YGGDWSFLDK LLTSSSSSTN 300 IQPPTQAKHL VGTSNQAAVL TDHDLGSNVG SERFPFQYLG NEVNLLKFSK

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MEIGSSSTSL SGGGQLLVPP GFRFHPTEEE LLYYYLKKKV SYEAIDLDVI REVDLNKLEP  60
WDLKEKCRVG SGPQNEWYFF SHKDKKYPTG TRTNRATAAG FWKATGRDKS IHLGSSKKIG  120
LRKTLVFYTG RAPHGQKTEW IMHEYRLDDS ENEIQEDGWV VCRVFKKKNH FRGFHQDQED  180
HSHHYMSTDT DHHHYDHHHH NINPNPNNPS SFPHPLDHHR HHHTTHQQPL YDFANTFDHN  240
SMHLPQLFSP ESAMAAHPFV SLNTTDLQCS QNLLRLTSNS YGGDWSFLDK LLTSSSSSTN  300
IQPPTQAKHL VGTSNQAAVL TDHDLGSNVG SERFPFQYLG NEVNLLKFSK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	9e-49	14	171	11	172	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269\|PubMed:19081078, ECO:0000269\|PubMed:20197506}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010537831.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010537831.1	0.0	PREDICTED: protein SOMBRERO
Refseq	XP_019057945.1	0.0	PREDICTED: protein SOMBRERO
Swissprot	Q9MA17	1e-157	SMB_ARATH; Protein SOMBRERO
TrEMBL	A0A0D3CVS7	1e-174	A0A0D3CVS7_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6FWE5	1e-174	A0A3P6FWE5_BRAOL; Uncharacterized protein
STRING	XP_010537831.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6653	25	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79580.3	4e-91	NAC family protein

Publications ? help Back to Top
Fendrych M, et al. Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in Arabidopsis. Curr. Biol., 2014. 24(9): p. 931-40 [PMID:24726156] Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Kamiya M, et al. Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis. Development, 2016. 143(21): p. 4063-4072 [PMID:27803060]