PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010537324.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GRAS
Protein Properties Length: 591aa    MW: 66368 Da    PI: 4.6036
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010537324.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS428.45.6e-1312215912374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++ Ll+cA+++s+g+ e+a +++++l++ +s +gdp +R+aay++e+Laar+a s++ lykal+++e +   s+e+laa+++++ev+P++kf++l
  XP_010537324.1 221 RQILLRCARVLSEGKSEEALSMINELRQVVSIQGDPSERIAAYMVEGLAARMAASGKFLYKALKCKEPP---SDERLAAMQVLFEVCPCFKFGFL 312
                     689*****************************************************************9...9********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     +aN aI ea+e ee+vHiiDfdi+qG Q+++L++++a  p+++p+lR+Tg+++pes+      l+ +g rL+++Ae lgvpf+f++ v ++++ +
  XP_010537324.1 313 AANGAIIEALEDEEEVHIIDFDINQGNQYITLIRTIAGLPGKTPRLRLTGIDDPESVqrTVGGLRIIGLRLEQLAEDLGVPFRFTA-VPSKTSIV 406
                     *******************************************************99778889***********************.7******* PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     ++++L  kpgE+l+Vn+++qlh+++desvs+ +erd++L++vksl+Pk+v+vveq++++n+++F+ rflea +yysa+f+sl+ +lpr+s++r++
  XP_010537324.1 407 TPSMLGHKPGETLIVNFAFQLHHMPDESVSTVNERDQLLHMVKSLNPKLVTVVEQDVNTNTAPFFPRFLEAYDYYSAVFESLDITLPRDSQDRMN 501
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     vEr++l+r+ivnvvaceg+er+er e ++kWr+r+++aGF + p+s ++++++++l+++ + d y+++ee g+l + W++++L+++SaWr
  XP_010537324.1 502 VERQCLARDIVNVVACEGEERIERYEVAGKWRARMMMAGFASKPMSLRVTSTIQSLIKQQYCDRYKLKEEMGELHFSWEEKSLIVASAWR 591
                     *************************************************************888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.399194571IPR005202Transcription factor GRAS
PfamPF035142.0E-128221591IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MSLVRSAEPS AASYRNPKLY SLKENSNNVG LSSSQVFASD RPPNNMFLAD SYSSQSYEKY  60
FLDSPTEELI QPLGSGASMS SYGSPETYPY QTRPVLGCSM EIQMPFDSSF PSPRMFGGHQ  120
AEFLQSSTGM DVVEFDEDKM RSKIQELERV LFEDDNDGIM GIDQLMDIDN EWSYPNEKEH  180
EQNQNSPKES SSADSNSNLS SVSISNKEVL SQTSSETTTP RQILLRCARV LSEGKSEEAL  240
SMINELRQVV SIQGDPSERI AAYMVEGLAA RMAASGKFLY KALKCKEPPS DERLAAMQVL  300
FEVCPCFKFG FLAANGAIIE ALEDEEEVHI IDFDINQGNQ YITLIRTIAG LPGKTPRLRL  360
TGIDDPESVQ RTVGGLRIIG LRLEQLAEDL GVPFRFTAVP SKTSIVTPSM LGHKPGETLI  420
VNFAFQLHHM PDESVSTVNE RDQLLHMVKS LNPKLVTVVE QDVNTNTAPF FPRFLEAYDY  480
YSAVFESLDI TLPRDSQDRM NVERQCLARD IVNVVACEGE ERIERYEVAG KWRARMMMAG  540
FASKPMSLRV TSTIQSLIKQ QYCDRYKLKE EMGELHFSWE EKSLIVASAW R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-5622659024377Protein SCARECROW
5b3h_D2e-5622659024377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010537324.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010537324.10.0PREDICTED: scarecrow-like protein 1
RefseqXP_010537326.10.0PREDICTED: scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLD7KK120.0D7KK12_ARALL; Uncharacterized protein
STRINGXP_010537324.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69532744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]