PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010537279.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Trihelix
Protein Properties Length: 512aa    MW: 58019 Da    PI: 8.8365
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010537279.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix971.7e-3044128187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW++qe+laL+++r++m++++r +++k+plW+evs+km e g++rs+k+C+ek+en+ k++k++keg+ +++++  +t+++fdql+a
  XP_010537279.1  44 RWPRQETLALLKIRSDMDTAFRHASAKGPLWDEVSRKMLEIGYNRSAKKCREKFENVYKYHKRTKEGRTRKSQG--KTYRFFDQLDA 128
                     8********************************************************************97544..47*******85 PP
2trihelix101.19.1e-32328413186
        trihelix   1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rW+k e+ aLi++r+++++++ + g++k+p Weevs+ mr+ gf+rs+k+Ckekwen+nk++kk+ke++kkr + +s+tcpy++ql+
  XP_010537279.1 328 RWPKVEIEALIKLRTNLDSKYHEnGSQKGPMWEEVSAGMRRLGFNRSAKRCKEKWENINKYFKKVKESNKKR-PVDSKTCPYYHQLD 413
                     8*********************7589*********************************************8.9999********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.08537101IPR017877Myb-like domain
SMARTSM007173.3E-441103IPR001005SANT/Myb domain
CDDcd122033.81E-2343108No hitNo description
PfamPF138373.4E-1943129No hitNo description
PROSITE profilePS500907.12321386IPR017877Myb-like domain
SMARTSM007170.004325388IPR001005SANT/Myb domain
CDDcd122032.99E-23327393No hitNo description
PfamPF138371.4E-22328414No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MVMELGGGTT TAAAASQNSG ADAAVERLEG HDEETSRRGF GGNRWPRQET LALLKIRSDM  60
DTAFRHASAK GPLWDEVSRK MLEIGYNRSA KKCREKFENV YKYHKRTKEG RTRKSQGKTY  120
RFFDQLDALQ TQPQPQSQSP QPPSVNADNP PTCGVALATV TSTMPPPYTS VPPVPDIFCD  180
FPSDSAPSSS SSSDMETGGG TRKKRKKKWK DFFERMVKKV VEKQEELQTQ FLETLEKREN  240
ERMVREEAWR MEEMARIKRE REILSQERSN AAAKDATVMT LLQKQLSENP SLSHLSTHAP  300
PPPQTQILQP PPPQTQPNET ATSPSPSRWP KVEIEALIKL RTNLDSKYHE NGSQKGPMWE  360
EVSAGMRRLG FNRSAKRCKE KWENINKYFK KVKESNKKRP VDSKTCPYYH QLDVLYREKN  420
NMAMASTSTS STSMVEMKPK NTVPLVVQPE QQWPPAARTE PRPRPETQIE DVGLGENSGR  480
NPDQDRGREM DGEEEEDDDD GSGGEFEIVP SK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1201207RKKRKKK
2202206KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010537279.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF5735267e-36KF573526.1 Lilium hybrid cultivar Sorbonne LS-ZJU02 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010537279.10.0PREDICTED: trihelix transcription factor GT-2-like
SwissprotQ391171e-135TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A067H7R91e-162A0A067H7R9_CITSI; Uncharacterized protein
STRINGXP_010537279.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48492553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-59Trihelix family protein