PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010537164.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

GRAS

Protein Properties

Length: 647aa MW: 69300.2 Da PI: 6.2088

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010537164.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	347.8	1.7e-106	277	647	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 +++++e+A+a+s+g++ +a ++Lar+s++ +p+g++ q+++ +++ AL++rl+ + + +p+se e+l +++l++e+sP++k++++ XP_010537164.1 277 RQTIMEIATAISEGKTDMAAEILARVSQTPNPKGNSGQKITEFMLSALRSRLNP----VENPVPVSELY---GNEHLCSTQLLYELSPCFKLGFM 364 6899***********************************************9....77777888887...9****************** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlvakr 185 +aN aIlea+ e vH++Df++++G+Q+++Ll+aL++R+ ++pp ++iT+v ++ g +e+l+++g++L+++ ++lg++++fnv+v r XP_010537164.1 365 AANLAILEATLDEGLVHVVDFNVGEGGQYMNLLHALSTRQngkASPPVVKITAVLDSGDGsavLEESLKSVGDKLSQLGQRLGITVRFNVVVGLR 459 ************************************5555599***99766688899**********************9999 PP GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280 l dl+ e+L ++p+E laVnl+++l r++desv++e++rde+L+ ksl P+vv++veqe+++n+++Fl r++ea yy al+ds+e+++p+ ++ XP_010537164.1 460 LGDLSRESLGCDPDEPLAVNLAFKLCRVPDESVCTENPRDELLR--KSLAPRVVTLVEQEMNTNTAPFLPRVSEASAYYGALLDSVESTVPSSNS 552 *****************************************9..8******************************************** PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaW 373 +r+k+E+ l+r++vn+vace +r+er+e ++kWr r+++aGF+ +pls+++a+++++ l++ + g++v+e++g + +gW++r+L ++SaW XP_010537164.1 553 DRAKLEEG-LSRKLVNAVACESVSRVERCEVFGKWRLRMGMAGFELMPLSQTIAESMRSRLSNGNrvHPGFTVKEDNGGVSFGWMGRTLAVASAW 646 ****.*********************************************99998776789************************ PP GRAS 374 r 374 r XP_010537164.1 647 R 647 8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	47.806	250	625	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.9E-104	277	647	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 647 aa Download sequence Send to blast
MSSGFSGGGG REIFAGGGRS MNSGNNNGNN PPLSQPSYRN QLPGMFLDQI GNRNSGVHGF 60 AGKRTLADFQ AAEQTLTQLP NPAALNALFL RSVKPRTFQN LLSPLPPQFD LTANDLNLLG 120 SSSSTQRFGL PILPHLRSNH LPQTPQPGLG LCSGARMRFG SGNTALQGVP SVDPVRNGAQ 180 LGQDSEKMMS RLRELEKRLL DDDGDRQDDD AVSVITNANS EWSETIQSLV SPMMSPSPTP 240 NSNPSANLNP VSFSPSSSSS SSSSSPSAAS PVPVCSRQTI MEIATAISEG KTDMAAEILA 300 RVSQTPNPKG NSGQKITEFM LSALRSRLNP VENPVPVSEL YGNEHLCSTQ LLYELSPCFK 360 LGFMAANLAI LEATLDEGLV HVVDFNVGEG GQYMNLLHAL STRQNGKASP PVVKITAVLD 420 SGDGSAVLEE SLKSVGDKLS QLGQRLGITV RFNVVVGLRL GDLSRESLGC DPDEPLAVNL 480 AFKLCRVPDE SVCTENPRDE LLRKSLAPRV VTLVEQEMNT NTAPFLPRVS EASAYYGALL 540 DSVESTVPSS NSDRAKLEEG LSRKLVNAVA CESVSRVERC EVFGKWRLRM GMAGFELMPL 600 SQTIAESMRS RLSNGNRVHP GFTVKEDNGG VSFGWMGRTL AVASAWR

Sequence ? help Back to Top

Protein Sequence Length: 647 aa Download sequence Send to blast

MSSGFSGGGG REIFAGGGRS MNSGNNNGNN PPLSQPSYRN QLPGMFLDQI GNRNSGVHGF  60
AGKRTLADFQ AAEQTLTQLP NPAALNALFL RSVKPRTFQN LLSPLPPQFD LTANDLNLLG  120
SSSSTQRFGL PILPHLRSNH LPQTPQPGLG LCSGARMRFG SGNTALQGVP SVDPVRNGAQ  180
LGQDSEKMMS RLRELEKRLL DDDGDRQDDD AVSVITNANS EWSETIQSLV SPMMSPSPTP  240
NSNPSANLNP VSFSPSSSSS SSSSSPSAAS PVPVCSRQTI MEIATAISEG KTDMAAEILA  300
RVSQTPNPKG NSGQKITEFM LSALRSRLNP VENPVPVSEL YGNEHLCSTQ LLYELSPCFK  360
LGFMAANLAI LEATLDEGLV HVVDFNVGEG GQYMNLLHAL STRQNGKASP PVVKITAVLD  420
SGDGSAVLEE SLKSVGDKLS QLGQRLGITV RFNVVVGLRL GDLSRESLGC DPDEPLAVNL  480
AFKLCRVPDE SVCTENPRDE LLRKSLAPRV VTLVEQEMNT NTAPFLPRVS EASAYYGALL  540
DSVESTVPSS NSDRAKLEEG LSRKLVNAVA CESVSRVERC EVFGKWRLRM GMAGFELMPL  600
SQTIAESMRS RLSNGNRVHP GFTVKEDNGG VSFGWMGRTL AVASAWR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-35	282	646	25	378	Protein SCARECROW
5b3h_A	3e-35	282	646	24	377	Protein SCARECROW
5b3h_D	3e-35	282	646	24	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010537164.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010537164.1	0.0	PREDICTED: scarecrow-like protein 8
Swissprot	Q9FYR7	0.0	SCL8_ARATH; Scarecrow-like protein 8
TrEMBL	V4LHQ5	0.0	V4LHQ5_EUTSA; Uncharacterized protein
STRING	XP_010537164.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4350	28	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52510.1	0.0	SCARECROW-like 8