PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010536937.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family CO-like
Protein Properties Length: 367aa    MW: 39750.3 Da    PI: 6.8148
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010536937.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.81.7e-061949333
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedCllee 33
                    +r C+ +++  ++ fC+ ++++lC  C + +
  XP_010536937.1 19 ARPCDGCKSVAASVFCRVDSVFLCIACDSRI 49
                    689******99****************9876 PP
2zf-B_box26.99.7e-0958103342
        zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                      ++C+ +e+ ++   C+ +   lC +C + +H+       H+++p+
  XP_010536937.1  58 VWVCQVCEQAPAAVTCKADAAALCVSCDSDIHSAnplasrHDRIPV 103
                     689*****************************66899999998875 PP
3CCT69.21.1e-23297340144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea+++RY+eKrk+RkFeK+irY+sRKa+AesRpR+KGrF+k++
  XP_010536937.1 297 REARVSRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRT 340
                     9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003360.0521760IPR000315B-box-type zinc finger
PROSITE profilePS501198.5031760IPR000315B-box-type zinc finger
CDDcd000212.70E-62060No hitNo description
PROSITE profilePS5011910.39556103IPR000315B-box-type zinc finger
PfamPF006439.2E-757103IPR000315B-box-type zinc finger
CDDcd000211.27E-659103No hitNo description
SMARTSM003362.4E-861103IPR000315B-box-type zinc finger
PfamPF062035.5E-18297339IPR010402CCT domain
PROSITE profilePS5101716.747297339IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MGIELDHAKG MPGDWRSAAR PCDGCKSVAA SVFCRVDSVF LCIACDSRIY SSSRHERVWV  60
CQVCEQAPAA VTCKADAAAL CVSCDSDIHS ANPLASRHDR IPVEPFFDSA VAKLSSFLGN  120
FTSSAAVDFP ATTGHSDDLG VCPWLIPFDF NDNNKINIDT TAEMKSSDFV LSDFDRLIGF  180
ECPNSFHPPQ NSGGSDSVVP VQTKPSHVSA TNTDHCFDID FCRSKLSALR YPTQSTSHSV  240
STSSLEFGVV PEGSTSLSEI SIPFGRNVNG GSTATAGDPS PSLSVGTTNQ QICGSDREAR  300
VSRYREKRKN RKFEKTIRYA SRKAYAESRP RIKGRFAKRT EADNDNDIVL VGHVYASAAQ  360
YGVVPSF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010536937.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8977892e-32AB897789.1 Lemna aequinoctialis LaCOH1 mRNA for CONSTANS-like protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010536937.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 5-like
SwissprotQ9FHH81e-155COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLV4KXA91e-170V4KXA9_EUTSA; Uncharacterized protein
STRINGXP_010536937.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78992435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.11e-151CONSTANS-like 5
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]