PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010536928.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 343aa    MW: 38664.4 Da    PI: 7.0867
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010536928.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.96.3e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W +eEd  l+d+++ +G+g +W + ++++g++R++k+c++rw++yl
   XP_010536928.1 14 KGPWAPEEDAMLKDYIHNYGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP

2Myb_DNA-binding38.72.2e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +++eEd +++ +    G++ W+ Ia+ ++ gRt++++k++w++
   XP_010536928.1  69 GGFSEEEDNIILSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      569******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.649962IPR017930Myb domain
SuperFamilySSF466899.98E-2611109IPR009057Homeodomain-like
SMARTSM007171.3E-101364IPR001005SANT/Myb domain
PfamPF002497.9E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-231569IPR009057Homeodomain-like
CDDcd001671.03E-71662No hitNo description
PROSITE profilePS5129421.9263117IPR017930Myb domain
SMARTSM007177.4E-1267115IPR001005SANT/Myb domain
PfamPF002493.8E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-2370117IPR009057Homeodomain-like
CDDcd001677.41E-971113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWAPE EDAMLKDYIH NYGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNIIL SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLGR  120
QKQMSPSDSI SDSNQSSRSS QSQNLSNSAL ERLQLHMQLQ NLQSPFASFY NNPLLCPKLH  180
PLLDPRLASQ ENFPSLKSDQ NKFPQTNNRV SPLYGHCNAT ISPNSNPVEP SLNPFLDFRP  240
NPNWFLDNRS FFSTGLSQEI QLDRNGLGLV KEMDNSSKDA EVANDFDLLT EMNVGSSLWS  300
EEFERKMTSP SSWDSGSASV MGQTENGIVM FHDYAEMSYV ESA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010536928.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010536928.10.0PREDICTED: transcription factor MYB36
SwissprotQ9FKL21e-137MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A087GBQ11e-137A0A087GBQ1_ARAAL; Uncharacterized protein
TrEMBLV4NA221e-137V4NA22_EUTSA; Uncharacterized protein
STRINGXP_010536928.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78982639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-123myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]