PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010536889.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 244aa    MW: 27803.4 Da    PI: 4.6937
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010536889.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.52.8e-145699755
                    HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                      Er+RR+++N++++ Lr+++P+      +K++Ka+i + A++YI++Lq
  XP_010536889.1 56 LSERNRRQKLNQRLFALRSVVPNI-----TKMDKASIIKDAIDYIQELQ 99
                    57*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.54E-1841112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.7044998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.51E-1452103No hitNo description
SMARTSM003531.1E-1555104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-1755114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.3E-125699IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550212.29E-5165232No hitNo description
Gene3DG3DSA:3.30.70.2605.8E-4167224No hitNo description
PROSITE profilePS516718.78169242IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MENIDEEYKN YWETTTFFQN EELEYDSWPL DEAVSGSYDS SSPDGAASSP ASKNILSERN  60
RRQKLNQRLF ALRSVVPNIT KMDKASIIKD AIDYIQELQK EEKRLEVEIR ELESIRSKSL  120
NSELLVPVTA KKIKQQQQLQ VECGSTRSRS SSSPIEVLEV TFMGERTVVV STTCNKRTDT  180
MAKLCEVFQT LNLNILTVNI TSFSGMLFHT AFVQADEEEK EVLRVKIDSA IAAFNDPLRL  240
IQSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-145499954Transcription factor MYC2
5gnj_B4e-145499954Transcription factor MYC2
5gnj_E4e-145499954Transcription factor MYC2
5gnj_F4e-145499954Transcription factor MYC2
5gnj_G4e-145499954Transcription factor MYC2
5gnj_I4e-145499954Transcription factor MYC2
5gnj_M4e-145499954Transcription factor MYC2
5gnj_N4e-145499954Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010536889.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010536889.11e-180PREDICTED: transcription factor bHLH35 isoform X2
SwissprotQ2HIV91e-116BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A087GBL81e-118A0A087GBL8_ARAAL; Uncharacterized protein
STRINGXP_010536888.11e-161(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.11e-102bHLH family protein