PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010536888.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 246aa MW: 28044.8 Da PI: 4.7743 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.5 | 2.9e-14 | 56 | 99 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er+RR+++N++++ Lr+++P+ +K++Ka+i + A++YI++Lq XP_010536888.1 56 LSERNRRQKLNQRLFALRSVVPNI-----TKMDKASIIKDAIDYIQELQ 99 57*********************7.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.67E-18 | 41 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.704 | 49 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.16E-14 | 52 | 103 | No hit | No description |
SMART | SM00353 | 1.1E-15 | 55 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.9E-17 | 55 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.4E-12 | 56 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF55021 | 2.38E-5 | 167 | 234 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 5.9E-4 | 169 | 226 | No hit | No description |
PROSITE profile | PS51671 | 8.78 | 171 | 244 | IPR002912 | ACT domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 246 aa Download sequence Send to blast |
MENIDEEYKN YWETTTFFQN EELEYDSWPL DEAVSGSYDS SSPDGAASSP ASKNILSERN 60 RRQKLNQRLF ALRSVVPNIT KMDKASIIKD AIDYIQELQK EEKRLEVEIR ELESIRSKSL 120 NSELLVPVTA KKIKQQQQLQ VECGSTRSRS SSSPIEVLEL KVTFMGERTV VVSTTCNKRT 180 DTMAKLCEVF QTLNLNILTV NITSFSGMLF HTAFVQADEE EKEVLRVKID SAIAAFNDPL 240 RLIQSM |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 4e-14 | 54 | 99 | 9 | 54 | Transcription factor MYC2 |
5gnj_B | 4e-14 | 54 | 99 | 9 | 54 | Transcription factor MYC2 |
5gnj_E | 4e-14 | 54 | 99 | 9 | 54 | Transcription factor MYC2 |
5gnj_F | 4e-14 | 54 | 99 | 9 | 54 | Transcription factor MYC2 |
5gnj_G | 4e-14 | 54 | 99 | 9 | 54 | Transcription factor MYC2 |
5gnj_I | 4e-14 | 54 | 99 | 9 | 54 | Transcription factor MYC2 |
5gnj_M | 4e-14 | 54 | 99 | 9 | 54 | Transcription factor MYC2 |
5gnj_N | 4e-14 | 54 | 99 | 9 | 54 | Transcription factor MYC2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010536888.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010536888.1 | 0.0 | PREDICTED: transcription factor bHLH35 isoform X1 | ||||
Swissprot | Q2HIV9 | 1e-120 | BH035_ARATH; Transcription factor bHLH35 | ||||
TrEMBL | A0A087GBL8 | 1e-121 | A0A087GBL8_ARAAL; Uncharacterized protein | ||||
STRING | XP_010536888.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6367 | 27 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G57150.1 | 1e-105 | bHLH family protein |