PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010536819.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

FAR1

Protein Properties

Length: 838aa MW: 95955 Da PI: 8.005

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010536819.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	77.6	2.4e-24	55	160	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.................tekerrtraetrtgCkaklkvkkekdgkwevt 79 Y+eYA +vGF++ +++s++s+++g++++++fvC+ +g+++ +++ +++ r +r++ +t+Cka+l+vk+++dg+w+v XP_010536819.1 55 IYKEYAMSVGFTTIIKASRRSRMTGKFIDAKFVCTSYGSKKAASSEetrgtasntegfnipqtHRRGRMNRSSLKTDCKACLHVKRRQDGRWVVR 149 6*************************************99998899********998788888********************** PP FAR1 80 kleleHnHela 90 +l +eHnHe + XP_010536819.1 150 TLIKEHNHETF 160 ******976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.3E-22	55	160	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.4E-23	270	359	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.274	550	586	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.0E-6	558	584	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	7.5E-7	561	588	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 838 aa Download sequence Send to blast
MGIDLEMPSG EYHNVHLGDN RHQRRHGDGI NLNSVNNLEL HEGIEFESKE EAFAIYKEYA 60 MSVGFTTIIK ASRRSRMTGK FIDAKFVCTS YGSKKAASSE ETRGTASNTE GFNIPQTHRR 120 GRMNRSSLKT DCKACLHVKR RQDGRWVVRT LIKEHNHETF PGQTHSTKGR GFSDSSRARM 180 KKMSNSMLRE SGSDKKLEKQ YGAIAKEINS RQQLALEDGG VERLLNFFTD MQEENPFFFY 240 AMDISGEQTV RNAFWVDAKG RLDCDSFSDV VSIDTMYIKN QYKLPLVPFI GVNHHGQFLL 300 LGCGLLADDT ESEFIWLFRA WLKAMGGRQP RVILTSQNNM LKEAVSEVFS SSRHCFYMWS 360 TLGQMPEKLG HVMRQEKRFV DEINDSIYDA STSEEFEKRW WEVVDKYNLR DNSWLQSLYE 420 NREHWVPRYM KDVSLVGMST GQRSDSVNSH FDKYIQRKTT LKAFLDQYKA IMQGRCEEEA 480 KSDMETLHKQ PGLKSPSPFG KQMAGVYTHA MLKKFQVEVL GGVACHPKKE SEDGAKRIFR 540 VQDYEQKRAY VVVWNSESSE VSCSCLLFEL NGFLCRHAMI VLQMSGILSI PSRYVLKRWT 600 KDAKKREVVE AQYEVAPSRA QRYRDLCHRA FKLSEEASLS EESYIMVTNM LDEAFRKFEN 660 MNSSIGNEAE STSLAAQDPP RYEEITQSNA FDANKNSTAE SRQVHSLHEV LSIGKQEVWR 720 TTELRSRPSI VVDDYLGAQK LSHGMVESDS ITSNRDGYCA DQSNIQSLAH PNSLASVPSV 780 HSITRKRLYR AQEQSSFRPQ AMTSCFNIDD GLQETGQTSL RDLQPDSNAL KHHQSRHT

Sequence ? help Back to Top

Protein Sequence Length: 838 aa Download sequence Send to blast

MGIDLEMPSG EYHNVHLGDN RHQRRHGDGI NLNSVNNLEL HEGIEFESKE EAFAIYKEYA  60
MSVGFTTIIK ASRRSRMTGK FIDAKFVCTS YGSKKAASSE ETRGTASNTE GFNIPQTHRR  120
GRMNRSSLKT DCKACLHVKR RQDGRWVVRT LIKEHNHETF PGQTHSTKGR GFSDSSRARM  180
KKMSNSMLRE SGSDKKLEKQ YGAIAKEINS RQQLALEDGG VERLLNFFTD MQEENPFFFY  240
AMDISGEQTV RNAFWVDAKG RLDCDSFSDV VSIDTMYIKN QYKLPLVPFI GVNHHGQFLL  300
LGCGLLADDT ESEFIWLFRA WLKAMGGRQP RVILTSQNNM LKEAVSEVFS SSRHCFYMWS  360
TLGQMPEKLG HVMRQEKRFV DEINDSIYDA STSEEFEKRW WEVVDKYNLR DNSWLQSLYE  420
NREHWVPRYM KDVSLVGMST GQRSDSVNSH FDKYIQRKTT LKAFLDQYKA IMQGRCEEEA  480
KSDMETLHKQ PGLKSPSPFG KQMAGVYTHA MLKKFQVEVL GGVACHPKKE SEDGAKRIFR  540
VQDYEQKRAY VVVWNSESSE VSCSCLLFEL NGFLCRHAMI VLQMSGILSI PSRYVLKRWT  600
KDAKKREVVE AQYEVAPSRA QRYRDLCHRA FKLSEEASLS EESYIMVTNM LDEAFRKFEN  660
MNSSIGNEAE STSLAAQDPP RYEEITQSNA FDANKNSTAE SRQVHSLHEV LSIGKQEVWR  720
TTELRSRPSI VVDDYLGAQK LSHGMVESDS ITSNRDGYCA DQSNIQSLAH PNSLASVPSV  780
HSITRKRLYR AQEQSSFRPQ AMTSCFNIDD GLQETGQTSL RDLQPDSNAL KHHQSRHT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010536819.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010536819.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 1 isoform X3
TrEMBL	F4JU19	0.0	F4JU19_ARATH; FAR1-related sequence 1
STRING	XP_010536794.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G19990.2	0.0	FAR1-related sequence 1