PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010536794.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 849aa MW: 97240.6 Da PI: 8.2749 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 77.6 | 2.4e-24 | 55 | 160 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.................tekerrtraetrtgCkaklkvkkekdgkwevt 79 Y+eYA +vGF++ +++s++s+++g++++++fvC+ +g+++ +++ +++ r +r++ +t+Cka+l+vk+++dg+w+v XP_010536794.1 55 IYKEYAMSVGFTTIIKASRRSRMTGKFIDAKFVCTSYGSKKAASSEetrgtasntegfnipqtHRRGRMNRSSLKTDCKACLHVKRRQDGRWVVR 149 6***************************************99998899************998788888************************** PP FAR1 80 kleleHnHela 90 +l +eHnHe + XP_010536794.1 150 TLIKEHNHETF 160 ********976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.3E-22 | 55 | 160 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.4E-23 | 270 | 359 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.274 | 550 | 586 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 3.1E-6 | 558 | 584 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 7.5E-7 | 561 | 588 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 849 aa Download sequence Send to blast |
MGIDLEMPSG EYHNVHLGDN RHQRRHGDGI NLNSVNNLEL HEGIEFESKE EAFAIYKEYA 60 MSVGFTTIIK ASRRSRMTGK FIDAKFVCTS YGSKKAASSE ETRGTASNTE GFNIPQTHRR 120 GRMNRSSLKT DCKACLHVKR RQDGRWVVRT LIKEHNHETF PGQTHSTKGR GFSDSSRARM 180 KKMSNSMLRE SGSDKKLEKQ YGAIAKEINS RQQLALEDGG VERLLNFFTD MQEENPFFFY 240 AMDISGEQTV RNAFWVDAKG RLDCDSFSDV VSIDTMYIKN QYKLPLVPFI GVNHHGQFLL 300 LGCGLLADDT ESEFIWLFRA WLKAMGGRQP RVILTSQNNM LKEAVSEVFS SSRHCFYMWS 360 TLGQMPEKLG HVMRQEKRFV DEINDSIYDA STSEEFEKRW WEVVDKYNLR DNSWLQSLYE 420 NREHWVPRYM KDVSLVGMST GQRSDSVNSH FDKYIQRKTT LKAFLDQYKA IMQGRCEEEA 480 KSDMETLHKQ PGLKSPSPFG KQMAGVYTHA MLKKFQVEVL GGVACHPKKE SEDGAKRIFR 540 VQDYEQKRAY VVVWNSESSE VSCSCLLFEL NGFLCRHAMI VLQMSGILSI PSRYVLKRWT 600 KDAKKREVVE AQYEVAPSRA QRYRDLCHRA FKLSEEASLS EESYIMVTNM LDEAFRKFEN 660 MNSSIGNEAE STSLAAQDPP RYEEITQSNA FDANKNSTAE SRQVHSLHEV LSIGKQEVWR 720 TTELRSRPSI VVDDYLGAQK LSHGMVESDS ITSNRDGYCA DQSNIQSLAH PNSLASVPSV 780 HSITRKRLYR AQEQSSFRPQ AMTSCFNIDD GLQETRSSAR QQCLEASSVP THMTLHKAFL 840 RYKKTHDPS |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010536794.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010536794.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 1 isoform X1 | ||||
Refseq | XP_010536802.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 1 isoform X1 | ||||
TrEMBL | F4JU19 | 0.0 | F4JU19_ARATH; FAR1-related sequence 1 | ||||
STRING | XP_010536794.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM118 | 26 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G19990.2 | 0.0 | FAR1-related sequence 1 |