PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010536502.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MIKC_MADS
Protein Properties Length: 209aa    MW: 24459.2 Da    PI: 9.5392
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010536502.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.42.5e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien + rqvtfskRrng+lKKA+ELSvLCda+va+iifs++g+lye+ss
  XP_010536502.1  9 KRIENVTSRQVTFSKRRNGLLKKAHELSVLCDADVALIIFSQKGRLYEFSS 59
                    79***********************************************96 PP
2K-box707.4e-24851721299
           K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     +  ++l++e+  + k+ie L+  qR+l+G++L+s+s++eLq++ +q+eksl  iRs+K +l+ +q+e+l+ ke+el ee   L +++e
  XP_010536502.1  85 QYVQRLREEMGEMAKKIEILEVHQRKLMGQELDSCSVEELQEIADQIEKSLHIIRSRKAQLYEDQLEKLKAKERELLEERAWLCRRYE 172
                     567999*************************************************************************999888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.2E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.674161IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
CDDcd002656.24E-43374No hitNo description
SuperFamilySSF554559.68E-33374IPR002100Transcription factor, MADS-box
PfamPF003191.6E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-313859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.8987177IPR002487Transcription factor, K-box
PfamPF014865.1E-2388171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MVRGKIEIKR IENVTSRQVT FSKRRNGLLK KAHELSVLCD ADVALIIFSQ KGRLYEFSSS  60
DMQKTIQRYA KYTKEFVQGT PDVVQYVQRL REEMGEMAKK IEILEVHQRK LMGQELDSCS  120
VEELQEIADQ IEKSLHIIRS RKAQLYEDQL EKLKAKEREL LEERAWLCRR YEERKLMLSE  180
SGKAKGGRGD RRTPEVETGL FIGLPENRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A7e-22195195MEF2 CHIMERA
6bz1_B7e-22195195MEF2 CHIMERA
6bz1_C7e-22195195MEF2 CHIMERA
6bz1_D7e-22195195MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL42 and AGL71 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010536502.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019057926.11e-151PREDICTED: MADS-box protein AGL71-like
SwissprotQ9FLH51e-86AGL72_ARATH; MADS-box protein AGL72
TrEMBLD7MRJ73e-86D7MRJ7_ARALL; MADS-box protein
STRINGXP_010536502.11e-150(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51860.23e-80MIKC_MADS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]