PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010536358.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 893aa MW: 98663.7 Da PI: 6.0607 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76.8 | 2.4e-24 | 152 | 253 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae+ +++++ +l+++d++ ++W++++iyr++++r++lt+GW+ Fv +++L++gD+v+F + ++ XP_010536358.1 152 FCKTLTASDTSTHGGFSVPRRAAEKLfppldytAQPPTQ--ELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIR--DD 242 99*********************999****996444444..8************************************************5..45 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 + +l+v+v+r+ XP_010536358.1 243 KSQLMVGVRRA 253 6667*****97 PP | |||||||
2 | Auxin_resp | 115.3 | 5.4e-38 | 278 | 361 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaas++++F+++YnPra++seFv++++k++ka+ +++svGmRf m+fete+s +rr++Gt+vg+sdldp+rWp+SkWr+L+ XP_010536358.1 278 AAHAASNRTPFTIFYNPRACPSEFVIPLAKYRKAICgTQLSVGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQ 361 79********************************998*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.35E-46 | 139 | 281 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-41 | 145 | 266 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.72E-23 | 151 | 252 | No hit | No description |
SMART | SM01019 | 3.0E-25 | 152 | 254 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.8E-22 | 152 | 253 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.225 | 152 | 254 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 4.1E-33 | 278 | 361 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.0E-8 | 776 | 870 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 23.719 | 784 | 868 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 5.3E-7 | 797 | 863 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048507 | Biological Process | meristem development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 893 aa Download sequence Send to blast |
MACLEDKFKT NGVVNGGTTT QQTTLLEEMK LLKEMQQQSG TKKAAINSEL WHSCAGPLVC 60 LPQVGSLVYY FPQGHSEQVA VSTRRSATTQ VPNYPNLPSQ LMCQVHNLTL HVDKETDEIY 120 AQMSLQPVHS ERDVFPVPDF GLRTSKHPSE FFCKTLTASD TSTHGGFSVP RRAAEKLFPP 180 LDYTAQPPTQ ELVVRDLHDN TWTFRHIYRG QPKRHLLTTG WSLFVGSKRL RAGDSVLFIR 240 DDKSQLMVGV RRANRQQTAL PSSVLSADSM HIGVLAAAAH AASNRTPFTI FYNPRACPSE 300 FVIPLAKYRK AICGTQLSVG MRFGMMFETE ESGKRRYMGT IVGISDLDPL RWPGSKWRNL 360 QVEWDEPGCN DRPTRVSAWD IETPESLFIF PSLTSGLKRP LRPSFLRGET EWGSLIKRPL 420 IRVSDSIDGI LPYTSIPGLG SEHLMKMMMM KTHNPNAAFV SAMAMQQNAI GNGALLEKLK 480 TLQPVMNKKP EIVQTEHKLT VNPSASITSA SEQNLSPIVS APGKPETQMP SGCTSGKRKL 540 EPEPSEEQAS QVTSVTECEE EKVNQLNQRS GLSPLQADPC SEISQQIYAP QPDPSSFNGL 600 SPFLETDELT SQVSSFQSVA GAYRPPLMLT SQESSQMVLP DSANTSLFHD VWDHQLNSLK 660 FDQFNPLMQQ DLFACQNICM SNSTNTSILD PSLPNTVLDD FTTIKEADFQ DPSGCLVGNT 720 CSVQDVQSQI TSASITESQA FSRQDFPDNS GGTGTSSSNV DFDDSSLLQN SKTSWQKVAA 780 PRVRTYTKVQ KAGSVGRSID VTSFRNYKEL KAAIECMFGL EGLLTDPKGP GWKLVYVDYE 840 SDVLLVGDDP WEEFVGCVRC IRILSPTEVQ QMSEEGMKLL NSAGVHDIKA SLP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 0.0 | 1 | 386 | 5 | 392 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00153 | DAP | Transfer from AT1G19850 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010536358.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010536358.1 | 0.0 | PREDICTED: auxin response factor 5 isoform X1 | ||||
Refseq | XP_010536360.1 | 0.0 | PREDICTED: auxin response factor 5 isoform X2 | ||||
Swissprot | P93024 | 0.0 | ARFE_ARATH; Auxin response factor 5 | ||||
TrEMBL | R0GUJ7 | 0.0 | R0GUJ7_9BRAS; Auxin response factor | ||||
STRING | XP_010536358.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5808 | 27 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G19850.1 | 0.0 | ARF family protein |