PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010536332.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family RAV
Protein Properties Length: 302aa    MW: 33865.7 Da    PI: 9.7658
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010536332.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.63.1e-1370119156
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     s+ykGV   + +grW A+I+       ++r++lg+f  + eAa+a++ a+++++g+
  XP_010536332.1  70 SKYKGVVPQP-NGRWGAQIYQK-----HQRVWLGTFNNESEAARAYDVAARRFRGH 119
                     89****9888.8******9993.....5**********88**************97 PP
2B398.25e-31201299184
                     EEEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                     f+k+ tpsdv+k++rlv+pk++ae+h                +++++++ + +ed++g++W+++++y+++s++yvltkGW++Fvk+++L++gD+v
  XP_010536332.1 201 FEKAVTPSDVGKLNRLVIPKPHAEKHfplptttdngnetasPSPSTKGMLMNFEDLTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVV 295
                     89******************************998777777666669************************************************ PP

                     EEEE CS
              B3  81 vFkl 84 
                      F++
  XP_010536332.1 296 SFER 299
                     **94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-870119IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-1870127IPR016177DNA-binding domain
CDDcd000188.00E-2570127No hitNo description
PROSITE profilePS5103219.80971126IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-2171126IPR001471AP2/ERF domain
SMARTSM003805.2E-2971132IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.106.6E-37193300IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.98E-30198299IPR015300DNA-binding pseudobarrel domain
CDDcd100171.22E-27200300No hitNo description
PROSITE profilePS5086314.41201302IPR003340B3 DNA binding domain
SMARTSM010192.7E-19201302IPR003340B3 DNA binding domain
PfamPF023629.0E-28201299IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MDAESSIEDR TTSTKSFSDS TLVSAEAEET AKLLSHPAVR LYRMVSGGSV VSDSDNVNGV  60
ETESRKLPSS KYKGVVPQPN GRWGAQIYQK HQRVWLGTFN NESEAARAYD VAARRFRGHN  120
AVTNFKYPAN DGGQNVTESA FLEAHSKAEI VDMLRKHTYE DELEQSKRRF HLSVVDGNGK  180
RYKTREAQND AVGGKTREML FEKAVTPSDV GKLNRLVIPK PHAEKHFPLP TTTDNGNETA  240
SPSPSTKGML MNFEDLTGKV WRFRYSYWNS SQSYVLTKGW SRFVKEKNLR AGDVVSFERS  300
TG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A6e-5219830211105DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010536332.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010536332.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription repressor TEM1-like, partial
SwissprotQ9C6M51e-135RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLA0A3N6PZN51e-137A0A3N6PZN5_BRACR; Uncharacterized protein
STRINGXP_010536332.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84827121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-129related to ABI3/VP1 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  3. Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A
    TEMPRANILLO is a regulator of juvenility in plants.
    Sci Rep, 2014. 4: p. 3704
    [PMID:24424565]
  4. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  5. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  6. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]