PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010536267.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

NAC

Protein Properties

Length: 669aa MW: 76518.8 Da PI: 7.0312

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010536267.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	118.8	5.3e-37	276	399	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 p+G rF+Ptdeelv +yLk+k+e+k+l++ ++i +vdiy+++P +L k+ k +++ew+fF++ d+k++++ r++r++ g W+atgk +ev+ XP_010536267.1 276 PRGWRFSPTDEELVFFYLKPKIEQKPLPM-DMIVDVDIYDYHPDTLSaKRKKCNDEEWFFFTRMDNKSHNSGRRKRKAFGGHWRATGK-REVYF- 367 89*************************.99**********9556667999**********999999***9.78888. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyr 127 +++++g+k+++vf++g+ p+ ek W+m+ey XP_010536267.1 368 NEQKIGTKRSMVFHNGDPPNDEKPGWLMKEYC 399 7999*************************7 PP
2	NAM	111.4	9.8e-35	474	599	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrk.nratksgyWkatgkdkevls 94 p+GfrF Ptdeel+v+yLk+++e+k+l++ + i ev+iy+++P +L + k +++ew+fF++r k+++++ r+ r++ gyW++ k ++v+s XP_010536267.1 474 PRGFRFLPTDEELIVCYLKPRIENKPLPM-NKILEVNIYDSHPDRLSeEYEKCNDEEWFFFTPRGKRKRNDGRPsCRKALGGYWRTWAKYEDVFS 567 89*************************.77**********9344445889****9999986665157999*********** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyr 127 ++++vg k+++vf +g p+ge+t+W+m+ey XP_010536267.1 568 -NERVVGKKRSMVFCNGVPPNGESTKWLMKEYC 599 .999**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.60.40.10	1.2E-20	91	227	IPR001932	PPM-type phosphatase domain
SMART	SM00332	0.01	99	325	IPR001932	PPM-type phosphatase domain
SuperFamily	SSF81606	4.05E-14	105	194	IPR001932	PPM-type phosphatase domain
Pfam	PF00481	2.0E-8	106	197	IPR001932	PPM-type phosphatase domain
PROSITE pattern	PS01032	0	136	144	IPR000222	PPM-type phosphatase, divalent cation binding
SuperFamily	SSF101941	1.83E-43	272	429	IPR003441	NAC domain
PROSITE profile	PS51005	41.58	275	429	IPR003441	NAC domain
Pfam	PF02365	2.9E-20	276	399	IPR003441	NAC domain
SuperFamily	SSF101941	2.48E-41	472	629	IPR003441	NAC domain
PROSITE profile	PS51005	39.816	473	629	IPR003441	NAC domain
Pfam	PF02365	1.5E-18	474	599	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003824	Molecular Function	catalytic activity
GO:0043169	Molecular Function	cation binding

Sequence ? help Back to Top
Protein Sequence Length: 669 aa Download sequence Send to blast
MTWLPRVSIR REIAVLLSGR QNWGAGGVDL TGLEAEEAGS ASVGQVSRRI DNCSADGELP 60 KKTKVRDSVS GILSSSSPSS ERDMESERLA VEVETGFVSD EPKFEMASAW GRRRDMEDAV 120 SIHHSFYRKN SDNPHFFGVF DGHGCSHVAE KCREQLYEIV KRDFEVSMAE EWTETMAKSF 180 LKMDKEVSRI NSNRADSTDA SFSLLGATQS NQPSSSHRRR SSSPTAVTPA PSSAVTAHPS 240 LLRSQVSIWQ EIMLNRLRPS AIGADPEILD SLSRFPRGWR FSPTDEELVF FYLKPKIEQK 300 PLPMDMIVDV DIYDYHPDTL SAKRKKCNDE EWFFFTRMDN KSHNSGRRKR KAFGGHWRAT 360 GKREVYFNEQ KIGTKRSMVF HNGDPPNDEK PGWLMKEYCC TVAIPPTRQE TDQESRKQLD 420 YVLCKIYKKK VPKNNALQGN DPPNGDDDND DDHDDGNGDD DGRHNDDDFI SKFPRGFRFL 480 PTDEELIVCY LKPRIENKPL PMNKILEVNI YDSHPDRLSE EYEKCNDEEW FFFTPRGKRK 540 RNDGRPSCRK ALGGYWRTWA KYEDVFSNER VVGKKRSMVF CNGVPPNGES TKWLMKEYCC 600 TVAAPPPRQE TEKGKSMRLD YVLCKIYKTK NAQGSGDKGR KHQADDVLSD NPPDAVEQQL 660 QPPVFYQFL

Sequence ? help Back to Top

Protein Sequence Length: 669 aa Download sequence Send to blast

MTWLPRVSIR REIAVLLSGR QNWGAGGVDL TGLEAEEAGS ASVGQVSRRI DNCSADGELP  60
KKTKVRDSVS GILSSSSPSS ERDMESERLA VEVETGFVSD EPKFEMASAW GRRRDMEDAV  120
SIHHSFYRKN SDNPHFFGVF DGHGCSHVAE KCREQLYEIV KRDFEVSMAE EWTETMAKSF  180
LKMDKEVSRI NSNRADSTDA SFSLLGATQS NQPSSSHRRR SSSPTAVTPA PSSAVTAHPS  240
LLRSQVSIWQ EIMLNRLRPS AIGADPEILD SLSRFPRGWR FSPTDEELVF FYLKPKIEQK  300
PLPMDMIVDV DIYDYHPDTL SAKRKKCNDE EWFFFTRMDN KSHNSGRRKR KAFGGHWRAT  360
GKREVYFNEQ KIGTKRSMVF HNGDPPNDEK PGWLMKEYCC TVAIPPTRQE TDQESRKQLD  420
YVLCKIYKKK VPKNNALQGN DPPNGDDDND DDHDDGNGDD DGRHNDDDFI SKFPRGFRFL  480
PTDEELIVCY LKPRIENKPL PMNKILEVNI YDSHPDRLSE EYEKCNDEEW FFFTPRGKRK  540
RNDGRPSCRK ALGGYWRTWA KYEDVFSNER VVGKKRSMVF CNGVPPNGES TKWLMKEYCC  600
TVAAPPPRQE TEKGKSMRLD YVLCKIYKTK NAQGSGDKGR KHQADDVLSD NPPDAVEQQL  660
QPPVFYQFL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4n0g_A	3e-37	97	236	27	159	Protein phosphatase 2C 37
4n0g_B	3e-37	97	236	27	159	Protein phosphatase 2C 37

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010536267.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010536267.1	0.0	PREDICTED: uncharacterized protein LOC104811304
STRING	XP_010536267.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18874	6	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	1e-33	NAC domain containing protein 25