PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010536056.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

FAR1

Protein Properties

Length: 746aa MW: 86266.6 Da PI: 7.5519

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010536056.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.6	3.2e-26	29	114	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY+eYAk+vGF + k +s++s+ ++e+++++f C ++g++++++++ ++r++ ++gCka+++vk++ +g+w+v++++++HnHel p XP_010536056.1 29 FYKEYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGSKQQSDDA----INPRPSPKIGCKASMHVKRRPNGRWYVYSFVKDHNHELLP 114 9**************************************99887....9**********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.1E-24	29	114	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.7E-26	227	319	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.596	507	543	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.1E-7	516	541	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.9E-7	518	545	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 746 aa Download sequence Send to blast
MDLGDSPGSV ISEPRPEMEF DTHEDAYLFY KEYAKSVGFG TAKLSSRRSR ASKEFIDAKF 60 SCIRYGSKQQ SDDAINPRPS PKIGCKASMH VKRRPNGRWY VYSFVKDHNH ELLPDQAHFF 120 RSHRNTDPLK SDARFRRKKN VSAVSKLFSA YQNLDFLDCY ARNQHDKGRH LVLQSGDAQY 180 LLEFFMCMQE ENPKFFYAID FSEDHRLRNV FWVDAKGVED YRSCSDVVSF DTTYFVNKYE 240 VPLVLFVGVN HHVQQVLLGC GLIADDTVYT YAWLMQTWLM AMNDQAPKVM LTDQNNSIKA 300 AVAALFPETR HCFCLWYVLE RLPRNLDYWS LWEDAFTKKF YKCIYRSWTE EEFERRWLKL 360 LEKFHLREVQ WMRSLYEERK YWAPTFMKGI TFAGLSTPHR SESLNSVFDR YIKDDSSLRG 420 ILGQYKLILE DMYEEEAKAS FDAWHEVPQL KSPSPFEKQI SLIYTHEIFK KFQLEVLGAA 480 ACHLKKESEN EAAATYSVKD FEDDQKYLVE WNESRSDILC SCRSFEYKGY LCRHAIVVLQ 540 MSGVFSIPTN YVLQRWTNAA KFRHGISENL DEVQSNIRRF NDLCRRAIIL GEEGSLSQES 600 YDLALLAIKE GLRQCAIKTN NIEDQTRSGE PTIQAGYPVQ EENERGSASK EKATDPKPNN 660 MSSAETRREK KGSQSNVLKK AKHVPQCGAV GAGSQEGFQQ LASPRPLQVV IPGQFHNTIP 720 SVFQNVIPAE FQNVRPTNIH SGNPSP

Sequence ? help Back to Top

Protein Sequence Length: 746 aa Download sequence Send to blast

MDLGDSPGSV ISEPRPEMEF DTHEDAYLFY KEYAKSVGFG TAKLSSRRSR ASKEFIDAKF  60
SCIRYGSKQQ SDDAINPRPS PKIGCKASMH VKRRPNGRWY VYSFVKDHNH ELLPDQAHFF  120
RSHRNTDPLK SDARFRRKKN VSAVSKLFSA YQNLDFLDCY ARNQHDKGRH LVLQSGDAQY  180
LLEFFMCMQE ENPKFFYAID FSEDHRLRNV FWVDAKGVED YRSCSDVVSF DTTYFVNKYE  240
VPLVLFVGVN HHVQQVLLGC GLIADDTVYT YAWLMQTWLM AMNDQAPKVM LTDQNNSIKA  300
AVAALFPETR HCFCLWYVLE RLPRNLDYWS LWEDAFTKKF YKCIYRSWTE EEFERRWLKL  360
LEKFHLREVQ WMRSLYEERK YWAPTFMKGI TFAGLSTPHR SESLNSVFDR YIKDDSSLRG  420
ILGQYKLILE DMYEEEAKAS FDAWHEVPQL KSPSPFEKQI SLIYTHEIFK KFQLEVLGAA  480
ACHLKKESEN EAAATYSVKD FEDDQKYLVE WNESRSDILC SCRSFEYKGY LCRHAIVVLQ  540
MSGVFSIPTN YVLQRWTNAA KFRHGISENL DEVQSNIRRF NDLCRRAIIL GEEGSLSQES  600
YDLALLAIKE GLRQCAIKTN NIEDQTRSGE PTIQAGYPVQ EENERGSASK EKATDPKPNN  660
MSSAETRREK KGSQSNVLKK AKHVPQCGAV GAGSQEGFQQ LASPRPLQVV IPGQFHNTIP  720
SVFQNVIPAE FQNVRPTNIH SGNPSP

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010536056.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010536056.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X2
Swissprot	Q6NQJ7	0.0	FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBL	A0A087HIV3	0.0	A0A087HIV3_ARAAL; Uncharacterized protein
STRING	XP_010536055.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.1	0.0	FAR1-related sequence 4

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]