PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010535799.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | ARF | ||||||||
Protein Properties | Length: 1113aa MW: 122590 Da PI: 6.5831 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 67.3 | 2.2e-21 | 127 | 227 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d + +W +++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++ XP_010535799.1 127 FCKTLTASDTSTHGGFSVPRRAAEKIfppldySMQPPA-QELVAKDIHDTTWAFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI--RDMK 218 99*****************************9545444.38************************************************..5677 PP E..EEEEE- CS B3 90 felvvkvfr 98 +l+++++ XP_010535799.1 219 SQLLLGIRH 227 778998876 PP | |||||||
2 | Auxin_resp | 122.5 | 3.1e-40 | 253 | 335 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPra+++eFvv+++k+ ka++ +vs+GmRf+m+feted+ rr++Gtv+g+sdldpvrW+nS+Wr+L+ XP_010535799.1 253 AAHAAANNSPFTIFYNPRAAPAEFVVPLAKYTKAMYAQVSLGMRFRMMFETEDCGVRRYMGTVTGISDLDPVRWKNSQWRNLQ 335 79*******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.19E-44 | 117 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.0E-40 | 120 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.79E-18 | 126 | 226 | No hit | No description |
Pfam | PF02362 | 5.0E-19 | 127 | 227 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.589 | 127 | 229 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.2E-20 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 5.1E-35 | 253 | 335 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.0E-9 | 983 | 1072 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 26.956 | 986 | 1079 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 9.81E-9 | 999 | 1064 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009638 | Biological Process | phototropism | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009785 | Biological Process | blue light signaling pathway | ||||
GO:0010311 | Biological Process | lateral root formation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1113 aa Download sequence Send to blast |
MKSPSSNGVS PNPGGGEKKT INSELWHACA GPLISLPPAG SLVVYFPQGH SEQVAASMQK 60 QTDFIPSYPN LPSKLICMLH CVTLHADRET DEVYAQMTLQ PVNKYEKEAL LASDMGLKQN 120 NQPAEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDYSM QPPAQELVAK DIHDTTWAFR 180 HIYRGQPKRH LLTTGWSVFV STKRLFAGDS VLFIRDMKSQ LLLGIRHANR QQPALSSSVI 240 SSDSMHIGIL AAAAHAAANN SPFTIFYNPR AAPAEFVVPL AKYTKAMYAQ VSLGMRFRMM 300 FETEDCGVRR YMGTVTGISD LDPVRWKNSQ WRNLQVGWDE SAAGDRPSRV SVWDIEPVLT 360 PFYICPPPFF RPMFTGQPGM PDDENDIENA LKRAMPWLGD SFGMKDSSSS IFPGLSLVQW 420 MNMQQNGQLP VAQSGFFPSM VSPSAVHNNL GSEDSSKLLN FQAPAGLSSP NLQFNKPNPQ 480 AQLPQLPQPP TTLSQQQQLQ PLLQTSLXXX XXXXXTQQQQ QQQQQLQLQQ QQQQQQLKLQ 540 SQQQQLQPQQ QMQPPQPSLQ PHKLQQLAQQ QQLYNGSSQA QQLQMASASI TSNTITPSLI 600 VSQSFQQSQH QQTQMPLVTS NSQQPSQGSV NETGKTSSNL TTIPQDSQFQ PRQVEQQISG 660 MLQQSLPQKA HQAQVQQIFQ QGLLDNQPHL QFQLLQKLQQ QQQQQQQQQQ QQLLSPGSSL 720 LQSQLLHQQL QNQQLQQLPS CSNSLSTSTL PQSMQIPASQ SQDKQKLLEG IKPYPGIMDG 780 DPPSCSTSPS TNNCQVSSSN LLNRSQSGPA GLAPDAVSDV SGNLVHEFYN KPDMRLKQDL 840 ASSRGSDPQK FKVGVTDQLE AASASGTSYC LDGGNKQRNF SAPAFCLDGD AAQSHPRNGL 900 LPGANVESFV PDTFLSRGYD SQKDLQNLLS SYGGTTNDIG TEMSTSAART QSFGVPNVPA 960 ISNDVAVNDA GVLGGGLWAN QTQRMRTYTK VQKRGSVGRS IDVNRYRGYD ELRHDLARMF 1020 GIEGQLEDPQ TSDWKLVYVD HENDILLVGD DPWEEFVNCV QSIKILSSAE VQQMSLDGNF 1080 AGLSVPNEAC SGGDSGNGWR GHYGDNSAAS FNR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-170 | 15 | 356 | 45 | 388 | Auxin response factor 5 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010535799.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010535799.1 | 0.0 | PREDICTED: auxin response factor 7-like | ||||
STRING | XP_010535799.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2629 | 26 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G20730.2 | 0.0 | ARF family protein |