PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010535622.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 353aa    MW: 39989.3 Da    PI: 7.2704
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010535622.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.2e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd +l d+++++G+g +W + +++ g++R++k+c++rw++yl
   XP_010535622.1 14 RGPWSPEEDSKLRDYIERFGNGgNWISLPQKAGLKRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding39.31.5e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++++Ed ++  ++   G++ W+ Ia++++ gRt++++k++w++
   XP_010535622.1  69 GDFSEDEDRIICSLFSAIGSR-WSIIAAHLP-GRTDNDIKNYWNT 111
                      689******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.691962IPR017930Myb domain
SuperFamilySSF466896.94E-2712109IPR009057Homeodomain-like
SMARTSM007172.3E-111364IPR001005SANT/Myb domain
PfamPF002492.8E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-241569IPR009057Homeodomain-like
CDDcd001671.44E-81662No hitNo description
PROSITE profilePS5129422.48663117IPR017930Myb domain
SMARTSM007174.0E-1267115IPR001005SANT/Myb domain
PfamPF002491.9E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-2370117IPR009057Homeodomain-like
CDDcd001671.46E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MGRAPCCDKT KVKRGPWSPE EDSKLRDYIE RFGNGGNWIS LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGD FSEDEDRIIC SLFSAIGSRW SIIAAHLPGR TDNDIKNYWN TKLRKKLMAA  120
SSSSSADSMA SLSRQNPNPH HNVKNSPTIS TYQHHPYDQT HDKNPPKSQV SSDGFDQILP  180
INPVISVNPP SFLDSNINHF EDSTASFLMN YYNPMFHHYN DVKDNNNNSS LIMSSDQQSC  240
SSSENGSQHH GRREIHDVIN QDHHQVDVQC FGGYNVTTCY EHEHGHENQG QIQKGRGYFG  300
EITEMEKEYY CYGLGDLKQM ISTNIGGSSS GLSNVAENKS CLQQDKMGMP YLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010535622.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010535622.10.0PREDICTED: transcription factor RAX1
TrEMBLD7M1L67e-88D7M1L6_ARALL; Predicted protein
STRINGXP_010535622.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23000.12e-81myb domain protein 37