PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010535592.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | ARF | ||||||||
Protein Properties | Length: 804aa MW: 89120.5 Da PI: 7.0381 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76.3 | 3.5e-24 | 176 | 277 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k+lt sd++++g +++p++ ae++ ++++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F + +++ XP_010535592.1 176 FCKTLTASDTSTHGGFSVPRRAAEDCfppldHSQQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFL--RGEDG 268 99****************************956666778*************************************************..44999 PP ..EEEEE-S CS B3 91 elvvkvfrk 99 el+++++r+ XP_010535592.1 269 ELRLGIRRA 277 9*****996 PP | |||||||
2 | Auxin_resp | 120.5 | 1.3e-39 | 301 | 382 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a+a+s++s+F+v+Y+Pra++seF +++ek++++++++vs+G+Rf+m++e++d++err++G+v+g+sdldp+rWpnSkWr+L XP_010535592.1 301 VANAVSSRSMFHVFYSPRATHSEFLIPYEKYMASIRNPVSIGTRFRMRYEMDDCPERRCTGVVTGISDLDPYRWPNSKWRCL 382 689******************************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.0E-41 | 167 | 288 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.55E-44 | 170 | 286 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.06E-23 | 174 | 276 | No hit | No description |
PROSITE profile | PS50863 | 13.267 | 176 | 278 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-22 | 176 | 277 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.9E-24 | 176 | 278 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.4E-33 | 301 | 382 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 2.11E-10 | 672 | 755 | No hit | No description |
PROSITE profile | PS51745 | 23.209 | 677 | 759 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0010050 | Biological Process | vegetative phase change | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 804 aa Download sequence Send to blast |
MNFSSEGFME FDLNREAVSV EGKNGGGGLE RGSSGNSSSS SSSCSSGSTP SSASASSIYS 60 ELWHACAGPL TSLPKKGNVV VYFPQGHLEQ GVMVSSSSTL SPLEIPKFDL QPQIFCRVVN 120 IQLLANKETD EVYTQLTLLP QQEQAVLNME RKETGELGGD EERNGSSSTK RTPHMFCKTL 180 TASDTSTHGG FSVPRRAAED CFPPLDHSQQ RPSQELVAKD LHGVEWRFRH IYRGQPRRHL 240 LTTGWSIFVS QKNLVSGDAV LFLRGEDGEL RLGIRRAARP KHGLPNSIVE KNSCSNILSL 300 VANAVSSRSM FHVFYSPRAT HSEFLIPYEK YMASIRNPVS IGTRFRMRYE MDDCPERRCT 360 GVVTGISDLD PYRWPNSKWR CLLVRWDESF MSGHQERVSP WEMDPSASLP PLSIQQSPRP 420 KRSRTGLLEV LPVNPVMERG AFSVFEESIR PSEVLQGQEN IGFASHLHGC DVMNRRKLDI 480 AMPSHANPVL VSTGMKAKFG EFIGATTTRA YSGILDLERF PRVLQGQEIC SVRSFPQAAA 540 FNAPSWGAPI TGCNNNPFAY QANKSSFYPL ASQGLRSTGI PFHNLYNVGE VPSRWHRDMM 600 NSPRETEALG NVIQNLGIQN ERVLPEKVPT ASGLKTAMVS RQKGDDFNGK VPSGCKLFGF 660 SLPVETQASN PQNSSKRICT KVHKQGSLVG RAIDLSRLNG YDDLLTELER LFSMEGLLRD 720 PDKGWRILYT DSENDMMVVG DDPWLDFCNV VVKIHIYTKE EVEKMNVGHV NDDNQSCLEE 780 AALMVEASKS SSVSQPDFSP DSSN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-116 | 40 | 405 | 2 | 354 | Auxin response factor 1 |
4ldw_A | 1e-116 | 40 | 405 | 2 | 354 | Auxin response factor 1 |
4ldw_B | 1e-116 | 40 | 405 | 2 | 354 | Auxin response factor 1 |
4ldx_A | 1e-116 | 40 | 405 | 2 | 354 | Auxin response factor 1 |
4ldx_B | 1e-116 | 40 | 405 | 2 | 354 | Auxin response factor 1 |
4ldy_A | 1e-116 | 40 | 405 | 2 | 354 | Auxin response factor 1 |
4ldy_B | 1e-116 | 40 | 405 | 2 | 354 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010535592.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010535592.1 | 0.0 | PREDICTED: auxin response factor 4-like isoform X3 | ||||
Swissprot | Q9ZTX9 | 0.0 | ARFD_ARATH; Auxin response factor 4 | ||||
TrEMBL | A0A087GCH4 | 0.0 | A0A087GCH4_ARAAL; Auxin response factor | ||||
STRING | XP_010535590.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60450.1 | 0.0 | auxin response factor 4 |