PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010535405.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 417aa    MW: 47041.6 Da    PI: 9.2725
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010535405.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.57.6e-19105151148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd +l+++v+q+G + W+ Ia++m  gR +kqc++rw+++l
   XP_010535405.1 105 KGQWTAEEDMKLIRLVRQHGERKWAVIAEKME-GRAGKQCRERWHNHL 151
                      799*****************************.*************97 PP
2Myb_DNA-binding54.62.5e-17159201347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       W++eE+  lv+a+++ G++ W+ Ia+ ++ gRt++++k++w++ 
   XP_010535405.1 159 GWSEEEERVLVEAHTRIGNK-WAEIAKLIP-GRTENSIKNHWNTT 201
                      6*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.911100155IPR017930Myb domain
SuperFamilySSF466894.12E-30102198IPR009057Homeodomain-like
SMARTSM007176.4E-17104153IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-27106158IPR009057Homeodomain-like
CDDcd001677.12E-16108151No hitNo description
PfamPF139212.5E-18108166No hitNo description
PROSITE profilePS5129419.748156206IPR017930Myb domain
SMARTSM007172.2E-14156204IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.5E-22159204IPR009057Homeodomain-like
CDDcd001673.61E-11160200No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MEGRKPPPAE KSLVYGAAPP LTAVERFLYG QKEDALHSKK QEQCGDDQNK ENVMSGQKRE  60
KTAFFAGERK PSCNGDVIAK SSSNKDHKSG RRNVTKKHNS KNLIKGQWTA EEDMKLIRLV  120
RQHGERKWAV IAEKMEGRAG KQCRERWHNH LRPDIKKEGW SEEEERVLVE AHTRIGNKWA  180
EIAKLIPGRT ENSIKNHWNT TMRRQNSKRR HKPRGSDLNQ PPAKRPHVLQ NYIRGITNNN  240
SSSIAEKSLD LDQKYPQDDS ASSLMGDSYD EELFFMQNLF SNHPISLGNI CPEETSNHMV  300
QQQVTHSGFM VSSDSIKNPN PHLHNNNIGT VHQALHHGAM TTTPANTHLS SDLYLSYLLN  360
GTAPFSSPPS SSSSNLDFGY GEFLVPQANS TGARREVDLM EMLSSSCQGS NFCYPLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-461032052104C-Myb DNA-Binding Domain
1msf_C1e-461032052104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for female gametophyte fertility. Acts redundantly with MYB64 to initiate the FG5 transition during female gametophyte development. The FG5 transition represents the switch between free nuclear divisions and cellularization-differentiation in female gametophyte, and occurs during developmental stage FG5. {ECO:0000269|PubMed:24068955}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010535405.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010535405.10.0PREDICTED: myb-related protein 315
SwissprotQ9FIM41e-157MY119_ARATH; Transcription factor MYB119
TrEMBLA0A178UF861e-154A0A178UF86_ARATH; MYB119
STRINGXP_010535405.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42652656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.11e-149myb domain protein 119
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]