PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010535287.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 320aa    MW: 36138.3 Da    PI: 6.1162
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010535287.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.37.4e-15124175155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i   A++Y+k+L+
  XP_010535287.1 124 QRMTHIAVERNRRKQMNEYLAVLRSLMPPS---YAQRGDQASIIGGAINYVKELE 175
                     79****************************...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.85E-13122179No hitNo description
Gene3DG3DSA:4.10.280.103.0E-14123178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-17123186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.348123174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-12124175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-10129180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MALEAVVYQQ DPSGYVSCKD FLFHDLYFQE EQDGDTKNNI KLGQGQEQAF FSNYDTNRCT  60
DDNENSKPRA TENHQCTDLI PSLEGFGPLA MDHQPPPLAD VAGGGYRKRR RTRSSKNKEE  120
IENQRMTHIA VERNRRKQMN EYLAVLRSLM PPSYAQRGDQ ASIIGGAINY VKELEHLLQS  180
MEPRRKTRND DVAMDDRNNT SSSSPPPFSD FFTFPQYSSR PSVESPAAEG TAEIEVTMVE  240
SHANLRILSR KRPRQLVKLV SSIQSLSLTL LHLNVTSLGH SVLYSISVKV EEGSQLNTVD  300
DIAAAVNQIL RRIEEESAFR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106110RKRRR
2106111RKRRRT
3124135RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010535287.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010535287.10.0PREDICTED: transcription factor bHLH96
SwissprotQ9C7T41e-140BH096_ARATH; Transcription factor bHLH96
TrEMBLR0IFC41e-140R0IFC4_9BRAS; Uncharacterized protein
STRINGXP_010535287.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-128bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]