PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010535244.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 164aa MW: 18762.8 Da PI: 9.2297 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 47.3 | 2.6e-15 | 11 | 51 | 3 | 43 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i n s r vtf kR+ g++KK +EL +LC++ ++ ii+s XP_010535244.1 11 IRNGSIRRVTFKKRKVGLFKKLSELTILCGIPACAIIYSDY 51 89999*********************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 17.479 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.9E-15 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.98E-22 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.11E-20 | 2 | 86 | No hit | No description |
PRINTS | PR00404 | 1.2E-7 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-14 | 11 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-7 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MGRGKLNHEL IRNGSIRRVT FKKRKVGLFK KLSELTILCG IPACAIIYSD YNDDEAEVWP 60 NRREANAILD RLHRLPTAKQ TKNMLDQGGF LQKMIGKMER ELEREQKKNR CYELGLVVFH 120 NDLIDADYSE ELAVAARVLE QRIKAVTERV EAAMAVNSLC LMSA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010535244.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010535244.1 | 1e-119 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
Refseq | XP_010535250.1 | 1e-119 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
Refseq | XP_010535253.1 | 1e-119 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
Refseq | XP_010535258.1 | 1e-119 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
Refseq | XP_019057738.1 | 1e-119 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A087HQF0 | 5e-53 | A0A087HQF0_ARAAL; Uncharacterized protein | ||||
STRING | XP_010535244.1 | 1e-118 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22590.2 | 2e-54 | AGAMOUS-like 87 |