PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010535063.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HB-other
Protein Properties Length: 343aa    MW: 37817.4 Da    PI: 7.8522
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010535063.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox184.8e-061374655
                    S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
        Homeobox  6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                    +ft++++ e+e+  ++     p ++  e LA+k            ++ +qV +WFqNrR+  
  XP_010535063.1 13 RFTQTEVAEMEAILQEhnAAMPARNLLEALADKFsesadrkgkiVVQFKQVWNWFQNRRYAL 74
                    689999999999999754678999999999999999999999888999***********965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.37E-9477IPR009057Homeodomain-like
SMARTSM003897.4E-4781IPR001356Homeobox domain
CDDcd000860.00131375No hitNo description
PROSITE profilePS500719.071377IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.8E-71377IPR009057Homeodomain-like
PfamPF167198.2E-42132260IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MGRPPSNGGP AFRFTQTEVA EMEAILQEHN AAMPARNLLE ALADKFSESA DRKGKIVVQF  60
KQVWNWFQNR RYALRARGNK PPGKLNVSSM PVDGQTRNVL QPIPVPKFSQ APANVPSPSV  120
PAVTRGGSEN SYLEFEAKSA RDGAWYDVQA FLAHRNLETG DPEVQVRFSG FGVEEDEWVN  180
VKKHVRQRSL PCEASECVAV LPGDLILCFQ EGKDQALYFD AIVLDAQRRR HDVRGCRCRF  240
LVRYSHDQSE QEIVPLRKIC RRPETDYRLQ QLHTAPNDSS NSNQRHKPPP ETTTKSSGLD  300
LIGSVSSAPN SSGAAITTAA ADSVQPSSSS APISAGPVED VQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A3e-461332644134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B3e-461332644134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A3e-461332644134SHH1 SAWADEE
4iur_B3e-461332644134SHH1 SAWADEE
4iut_A3e-461332644134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B3e-461332644134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A3e-461332644134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B3e-461332644134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A3e-461332644134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B3e-461332644134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010535063.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010535063.10.0PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2-like isoform X1
RefseqXP_010535064.10.0PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2-like isoform X1
RefseqXP_010535065.10.0PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2-like isoform X1
SwissprotQ8RWJ70.0SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLR0G6A60.0R0G6A6_9BRAS; Uncharacterized protein
STRINGXP_010535063.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73992437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.31e-161sequence-specific DNA binding transcription factors;sequence-specific DNA binding