PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010534976.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | ERF | ||||||||
Protein Properties | Length: 378aa MW: 42172.7 Da PI: 4.8527 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.9 | 2.8e-19 | 126 | 175 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a++a +++++g XP_010534976.1 126 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARRIRG 175 69*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 24.092 | 126 | 183 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.12E-22 | 126 | 184 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.4E-38 | 126 | 189 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.37E-33 | 126 | 184 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.5E-32 | 126 | 184 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-11 | 127 | 138 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.5E-12 | 127 | 175 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-11 | 149 | 165 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070483 | Biological Process | detection of hypoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MCGGAIISDF IPPPKSHRGA SDYVWSDLKK NAKSLKKNSK KRSDFFDLEN EFEADFQGFK 60 DDSSIDFEDD FNADHVFSDV KPFVFAAPPK PAVRSAADSD GSAPSKKGPE FNGQTEKSVK 120 RKRKNQYRGI RQRPWGKWAA EIRDPRKGVR VWLGTFNTAE EAARAYDAEA RRIRGKKAKV 180 NFPEETPRLS QKCLAKANPQ KPVAKPPNPT LVQPYMDQIS NSDNPGQDCF DNTGLVDEKP 240 HVNNQFGLTN LFDAEDIAYP YFSSDQGSNS FDCSEFGWSD QGPKTPEISS MLVNDSTPFM 300 EDTNPSKKLK PTASSTDKSL SDELMEVKYF PTSFLDNTTW DSSLEAFFSG DAATTQDGSN 360 PMDLWTLDEI PSVLEGVF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-21 | 126 | 183 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 28 | 41 | KKNAKSLKKNSKKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the activation of hypoxic gene expression and in ethylene response. Partially redundant with RAP2-2. Acts as a downstream regulator in the ethylene signaling pathway. {ECO:0000269|PubMed:22020282, ECO:0000269|PubMed:22530619}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00204 | DAP | Transfer from AT1G53910 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010534976.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by hypoxia but not by ethylene. {ECO:0000269|PubMed:22020282}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010534976.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-12 | ||||
Swissprot | Q9SSA8 | 1e-123 | RA212_ARATH; Ethylene-responsive transcription factor RAP2-12 | ||||
TrEMBL | A0A061GJV1 | 1e-128 | A0A061GJV1_THECC; Transcription factor JERF1, putative isoform 1 | ||||
TrEMBL | R0G5V1 | 1e-128 | R0G5V1_9BRAS; Uncharacterized protein | ||||
STRING | XP_010534976.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.2 | 1e-106 | related to AP2 12 |