PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010534927.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GRF
Protein Properties Length: 336aa    MW: 37413.2 Da    PI: 8.9235
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010534927.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC789.5e-2581125145
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                     d+epgrCrRtDGKkWRCsr++++++k+CE+H+hrgr+r rks e+
  XP_010534927.1  81 DPEPGRCRRTDGKKWRCSREAYPDSKYCEKHMHRGRNRARKSLES 125
                     79***************************************9875 PP
2QLQ60.25.7e-211651237
             QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                    +FT+ Q+q+L++Q+l+yKy+++++PvPpeL++ i++
  XP_010534927.1 16 PFTPIQWQELEHQALVYKYMVSGVPVPPELVFSIRR 51
                    9*******************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.9E-121551IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.2E-151650IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.0351651IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.0181125IPR014977WRC domain
PfamPF088799.9E-2182123IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0030912Biological Processresponse to deep water
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MMGVSGNGSG RSERPPFTPI QWQELEHQAL VYKYMVSGVP VPPELVFSIR RSLDSSFAAR  60
LLPHQPFGWG CFQMGFGRKP DPEPGRCRRT DGKKWRCSRE AYPDSKYCEK HMHRGRNRAR  120
KSLESPTALS FTNSSSNKSF PSPNLSSSSS SSVDGYSNSS SIITAAHQTS PRFSSNSSSS  180
NNSNSSRGYL SYSLSYPYPS PSSSSSKPSD SGLSLQNSSS HLNVLASGAC PQSDKDFRYL  240
HGTLEGVGER TFFPEASRSF QESAYHQPLT AMSSPYHQRE HCFVLGTDMF HKPPVAVTKA  300
SEQQEQDQEQ EPKKPLHHFF GDDWLDLSSN PERYKP
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Acts together with GIF1 for the development of appropriate leaf size and shape through the promotion and/or maintenance of cell proliferation activity in leaf primordia. {ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:15960617}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010534927.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010534927.10.0PREDICTED: growth-regulating factor 5
SwissprotQ8L8A61e-113GRF5_ARATH; Growth-regulating factor 5
TrEMBLR0I2Z11e-115R0I2Z1_9BRAS; Uncharacterized protein
STRINGXP_010534927.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45672651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.17e-75growth-regulating factor 5