PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010534897.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | C2H2 | ||||||||
Protein Properties | Length: 453aa MW: 50031 Da PI: 8.7472 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.4 | 1.2e-05 | 112 | 134 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_010534897.1 112 FVCEICNKGFQRDQNLQLHRRGH 134 89*******************88 PP | |||||||
2 | zf-C2H2 | 13.5 | 0.00021 | 189 | 211 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ XP_010534897.1 189 WKCEKCSKRYAVQSDWKAHSKTC 211 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.07E-7 | 111 | 134 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.5E-5 | 111 | 134 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12171 | 7.1E-5 | 112 | 134 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 10.949 | 112 | 134 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.017 | 112 | 134 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 114 | 134 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 100 | 154 | 184 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 7.8E-5 | 177 | 210 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.07E-7 | 184 | 209 | No hit | No description |
SMART | SM00355 | 130 | 189 | 209 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 453 aa Download sequence Send to blast |
MRGEGMMMNK DVLFHHHQQQ QQQQVVAEDN MSNLTSASGD QASVSSGNNR TEASGSNFVN 60 PQQQQQLQYF VQQPQAQSSQ PPKKKRNQPG NPDPEAEVIA LSPKTLLATN RFVCEICNKG 120 FQRDQNLQLH RRGHNLPWKL KQRSKTEVVR KKVYVCPEPS CVHHDPSRAL GDLTGIKKHF 180 FRKHGEKKWK CEKCSKRYAV QSDWKAHSKT CGTKEYRCDC GTLFSRRDSF ITHRAFCDAL 240 AEESAKAVPT HQPNPLMVQS SSSSHNLITT LENYSTDSNP HPFSMKKEHE GSFNHTLTFP 300 PWLSPSNPNP SAGLFPFGPA TAASFHHPSP PSPAISATAL LQRAAQMGPT KTTPSSLNLA 360 TTMAEAMMAS PASMFQGYDA MSTNSAAGLE AFDESFGGLL RAEEKNGGGE GLTRDFLGLR 420 PLSHSDILSF AGIGDCFNGN VPEQQQQQNH SQK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 7e-35 | 185 | 246 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 7e-35 | 185 | 246 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 140 | 151 | KQRSKTEVVRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00206 | DAP | Transfer from AT1G55110 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010534897.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019057782.1 | 0.0 | PREDICTED: protein indeterminate-domain 7-like isoform X1 | ||||
Swissprot | Q8H1F5 | 1e-169 | IDD7_ARATH; Protein indeterminate-domain 7 | ||||
TrEMBL | A0A3P6BBU9 | 1e-180 | A0A3P6BBU9_BRACM; Uncharacterized protein | ||||
STRING | XP_010534893.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G55110.1 | 1e-149 | indeterminate(ID)-domain 7 |
Publications ? help Back to Top | |||
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