PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010534896.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

C2H2

Protein Properties

Length: 453aa MW: 50031 Da PI: 8.7472

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010534896.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.2e-05	112	134	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_010534896.1 112 FVCEICNKGFQRDQNLQLHRRGH 134 89*******************88 PP
2	zf-C2H2	13.5	0.00021	189	211	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ XP_010534896.1 189 WKCEKCSKRYAVQSDWKAHSKTC 211 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.07E-7	111	134	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.5E-5	111	134	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12171	7.1E-5	112	134	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.949	112	134	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	112	134	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	114	134	IPR007087	Zinc finger, C2H2
SMART	SM00355	100	154	184	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	7.8E-5	177	210	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.07E-7	184	209	No hit	No description
SMART	SM00355	130	189	209	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence Send to blast
MRGEGMMMNK DVLFHHHQQQ QQQQVVAEDN MSNLTSASGD QASVSSGNNR TEASGSNFVN 60 PQQQQQLQYF VQQPQAQSSQ PPKKKRNQPG NPDPEAEVIA LSPKTLLATN RFVCEICNKG 120 FQRDQNLQLH RRGHNLPWKL KQRSKTEVVR KKVYVCPEPS CVHHDPSRAL GDLTGIKKHF 180 FRKHGEKKWK CEKCSKRYAV QSDWKAHSKT CGTKEYRCDC GTLFSRRDSF ITHRAFCDAL 240 AEESAKAVPT HQPNPLMVQS SSSSHNLITT LENYSTDSNP HPFSMKKEHE GSFNHTLTFP 300 PWLSPSNPNP SAGLFPFGPA TAASFHHPSP PSPAISATAL LQRAAQMGPT KTTPSSLNLA 360 TTMAEAMMAS PASMFQGYDA MSTNSAAGLE AFDESFGGLL RAEEKNGGGE GLTRDFLGLR 420 PLSHSDILSF AGIGDCFNGN VPEQQQQQNH SQK

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence Send to blast

MRGEGMMMNK DVLFHHHQQQ QQQQVVAEDN MSNLTSASGD QASVSSGNNR TEASGSNFVN  60
PQQQQQLQYF VQQPQAQSSQ PPKKKRNQPG NPDPEAEVIA LSPKTLLATN RFVCEICNKG  120
FQRDQNLQLH RRGHNLPWKL KQRSKTEVVR KKVYVCPEPS CVHHDPSRAL GDLTGIKKHF  180
FRKHGEKKWK CEKCSKRYAV QSDWKAHSKT CGTKEYRCDC GTLFSRRDSF ITHRAFCDAL  240
AEESAKAVPT HQPNPLMVQS SSSSHNLITT LENYSTDSNP HPFSMKKEHE GSFNHTLTFP  300
PWLSPSNPNP SAGLFPFGPA TAASFHHPSP PSPAISATAL LQRAAQMGPT KTTPSSLNLA  360
TTMAEAMMAS PASMFQGYDA MSTNSAAGLE AFDESFGGLL RAEEKNGGGE GLTRDFLGLR  420
PLSHSDILSF AGIGDCFNGN VPEQQQQQNH SQK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	7e-35	185	246	3	64	Zinc finger protein JACKDAW
5b3h_F	7e-35	185	246	3	64	Zinc finger protein JACKDAW
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	140	151	KQRSKTEVVRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00206	DAP	Transfer from AT1G55110	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010534896.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019057782.1	0.0	PREDICTED: protein indeterminate-domain 7-like isoform X1
Swissprot	Q8H1F5	1e-169	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A3P6BBU9	1e-180	A0A3P6BBU9_BRACM; Uncharacterized protein
STRING	XP_010534893.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-149	indeterminate(ID)-domain 7

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]