PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010534893.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

C2H2

Protein Properties

Length: 474aa MW: 52590.9 Da PI: 8.363

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010534893.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	133	155	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_010534893.1 133 FVCEICNKGFQRDQNLQLHRRGH 155 89*******************88 PP
2	zf-C2H2	13.5	0.00022	210	232	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ XP_010534893.1 210 WKCEKCSKRYAVQSDWKAHSKTC 232 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.5E-5	132	155	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.07E-7	132	155	No hit	No description
Pfam	PF12171	7.5E-5	133	155	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.949	133	155	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	133	155	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	135	155	IPR007087	Zinc finger, C2H2
SMART	SM00355	100	175	205	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	8.3E-5	198	231	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.07E-7	205	230	No hit	No description
SMART	SM00355	130	210	230	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence Send to blast
MYLYIYDGDD GELWVPFLVL RMRGEGMMMN KDVLFHHHQQ QQQQQVVAED NMSNLTSASG 60 DQASVSSGNN RTEASGSNFV NPQQQQQLQY FVQQPQAQSS QPPKKKRNQP GNPDPEAEVI 120 ALSPKTLLAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LKQRSKTEVV RKKVYVCPEP 180 SCVHHDPSRA LGDLTGIKKH FFRKHGEKKW KCEKCSKRYA VQSDWKAHSK TCGTKEYRCD 240 CGTLFSRRDS FITHRAFCDA LAEESAKAVP THQPNPLMVQ SSSSSHNLIT TLENYSTDSN 300 PHPFSMKKEH EGSFNHTLTF PPWLSPSNPN PSAGLFPFGP ATAASFHHPS PPSPAISATA 360 LLQRAAQMGP TKTTPSSLNL ATTMAEAMMA SPASMFQGYD AMSTNSAAGL EAFDESFGGL 420 LRAEEKNGGG EGLTRDFLGL RPLSHSDILS FAGIGDCFNG NVPEQQQQQN HSQK

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence Send to blast

MYLYIYDGDD GELWVPFLVL RMRGEGMMMN KDVLFHHHQQ QQQQQVVAED NMSNLTSASG  60
DQASVSSGNN RTEASGSNFV NPQQQQQLQY FVQQPQAQSS QPPKKKRNQP GNPDPEAEVI  120
ALSPKTLLAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LKQRSKTEVV RKKVYVCPEP  180
SCVHHDPSRA LGDLTGIKKH FFRKHGEKKW KCEKCSKRYA VQSDWKAHSK TCGTKEYRCD  240
CGTLFSRRDS FITHRAFCDA LAEESAKAVP THQPNPLMVQ SSSSSHNLIT TLENYSTDSN  300
PHPFSMKKEH EGSFNHTLTF PPWLSPSNPN PSAGLFPFGP ATAASFHHPS PPSPAISATA  360
LLQRAAQMGP TKTTPSSLNL ATTMAEAMMA SPASMFQGYD AMSTNSAAGL EAFDESFGGL  420
LRAEEKNGGG EGLTRDFLGL RPLSHSDILS FAGIGDCFNG NVPEQQQQQN HSQK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-34	206	267	3	64	Zinc finger protein JACKDAW
5b3h_F	1e-34	206	267	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	161	172	KQRSKTEVVRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00206	DAP	Transfer from AT1G55110	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010534893.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010534893.1	0.0	PREDICTED: protein indeterminate-domain 7-like isoform X2
Swissprot	Q8H1F5	1e-168	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A1J3FCK1	1e-179	A0A1J3FCK1_NOCCA; Protein indeterminate-domain 11 (Fragment)
TrEMBL	A0A3P6BBU9	1e-180	A0A3P6BBU9_BRACM; Uncharacterized protein
STRING	XP_010534893.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM155	28	306

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-149	indeterminate(ID)-domain 7

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]