PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010534889.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | LBD | ||||||||
Protein Properties | Length: 239aa MW: 27094.3 Da PI: 5.1307 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.5 | 5.4e-39 | 29 | 127 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rrkCa+dC lapyfp++++++f n+hklFG+sn++k++++l+ e+++am+s++++++ara+dPv G++++i++lq ++e++++el+ XP_010534889.1 29 ACAACKYQRRKCAPDCLLAPYFPHDRHRQFLNAHKLFGVSNITKIIRTLNLPEKDAAMNSIMFQSDARAKDPVGGCYRIIRELQYEIECTRNELD 123 7********************************************************************************************99 PP DUF260 96 llke 99 l+ + XP_010534889.1 124 LVLQ 127 8866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.236 | 28 | 129 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.0E-36 | 29 | 125 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MPSGSISAFP STLSNIQRTG NSTGGTNQAC AACKYQRRKC APDCLLAPYF PHDRHRQFLN 60 AHKLFGVSNI TKIIRTLNLP EKDAAMNSIM FQSDARAKDP VGGCYRIIRE LQYEIECTRN 120 ELDLVLQHLA LFRECAHQEP RTQIQEPEDI SSFSSSFDLN NSLPCSYPLH EQAQEQQFCT 180 FTGLQEDMWC LQLQESSTTA NMEQVEDVSS ERHEHVEFEH EGFAERNLNM ASAQLIISS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-27 | 22 | 133 | 4 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-27 | 22 | 133 | 4 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010534889.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010534888.1 | 1e-180 | PREDICTED: LOB domain-containing protein 22 | ||||
Refseq | XP_010534889.1 | 1e-180 | PREDICTED: LOB domain-containing protein 22 | ||||
Refseq | XP_010534890.1 | 1e-180 | PREDICTED: LOB domain-containing protein 22 | ||||
Refseq | XP_010534891.1 | 1e-180 | PREDICTED: LOB domain-containing protein 22 | ||||
Refseq | XP_019057778.1 | 1e-180 | PREDICTED: LOB domain-containing protein 22 | ||||
Swissprot | Q9LRW1 | 1e-101 | LBD22_ARATH; LOB domain-containing protein 22 | ||||
TrEMBL | R0HMS1 | 1e-102 | R0HMS1_9BRAS; Uncharacterized protein | ||||
TrEMBL | R0I3Y5 | 1e-103 | R0I3Y5_9BRAS; Uncharacterized protein | ||||
STRING | XP_010534887.1 | 1e-180 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 4e-90 | LOB domain-containing protein 22 |
Publications ? help Back to Top | |||
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