PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010534783.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family G2-like
Protein Properties Length: 450aa    MW: 49850.3 Da    PI: 6.8381
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010534783.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.53.1e-33240294155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr+rWtpeLHerFv+av++L G+ekAtPk++l+lm+v+gLt++hvkSHLQkYRl
  XP_010534783.1 240 KPRMRWTPELHERFVQAVHSLEGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRL 294
                     79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.424237297IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.1E-32238295IPR009057Homeodomain-like
SuperFamilySSF466895.73E-18238294IPR009057Homeodomain-like
TIGRFAMsTIGR015576.1E-25240295IPR006447Myb domain, plants
PfamPF002491.6E-10242293IPR001005SANT/Myb domain
PfamPF143795.8E-23330377IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MNSHSLVSGT ADEGGVGQDC SSSISLVHNF LNFPPETRKA PSPFIRSQSP DSASHDHHPW  60
MKHGSKSTFS RSSSFCTNLY LSSSSSSETR KHLGNSLLPF LPNPSTYNQT ASAVESAKSP  120
AIFSEDIVTV TPPYNGGGSS SSGSLAKDFF NLPKDTCSDG GFHDLGCPND SFSLSEQMEL  180
QFLSDELELA ITDRAETPSL DEIYEMPMAM SNPGTEVSPR QNCVSAVMSH SSPGAATNQK  240
PRMRWTPELH ERFVQAVHSL EGPEKATPKA VLKLMNVEGL TIYHVKSHLQ KYRLAKYIPE  300
KREEKKNSNS EEKKSASSNS ETDGRKKGAI QITEALRMQM EVQKQLHEQL EVQRVLQLRI  360
EEHARYLQRM LEEQQKSGAL ITSSETLSSP TKSKQESSPQ LSSPTKNKAE EENSPKRHRI  420
DNKASESGEE NSPKRPRLDN KASESEERVR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-24240297259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-24240297259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-24240297259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-24240297259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-24240297259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-24240297259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-24240297259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-24240297259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00354DAPTransfer from AT3G13040Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010534783.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010534781.10.0PREDICTED: myb family transcription factor PHL6-like
RefseqXP_010534782.10.0PREDICTED: myb family transcription factor PHL6-like
RefseqXP_010534783.10.0PREDICTED: myb family transcription factor PHL6-like
RefseqXP_010534785.10.0PREDICTED: myb family transcription factor PHL6-like
RefseqXP_010534786.10.0PREDICTED: myb family transcription factor PHL6-like
SwissprotQ949U20.0PHL6_ARATH; Myb family transcription factor PHL6
TrEMBLR0HYE10.0R0HYE1_9BRAS; Uncharacterized protein
STRINGXP_010534781.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.21e-160G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]