PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010534614.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family G2-like
Protein Properties Length: 409aa    MW: 45646.7 Da    PI: 8.6151
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010534614.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1023.7e-3280133255
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     prlrWtpeLH++F++ave+LGG+++AtPk +l++m+vkgL+++hvkSHLQ+YR+
  XP_010534614.1  80 PRLRWTPELHRCFLQAVERLGGQDRATPKLVLQTMNVKGLSIAHVKSHLQMYRS 133
                     8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-3076134IPR009057Homeodomain-like
PROSITE profilePS5129414.19976136IPR017930Myb domain
SuperFamilySSF466891.97E-1677135IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-2480135IPR006447Myb domain, plants
PfamPF002494.2E-981132IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MRSSTNSSEN SKTCPSNSCK TIKKEEEDKD IDDEGDQEEA KTRGDHQSSS SNSYVEECPG  60
HHQIKKNGGS VRPYNRSKTP RLRWTPELHR CFLQAVERLG GQDRATPKLV LQTMNVKGLS  120
IAHVKSHLQM YRSKKADEPN QGQQGFSFET GTGYTCSLSQ VPMLQSFDQR PSTSLGYDDP  180
SWSDHGPLIN CNPWRGLTTR DGARSGQPLF ISLNERFHRS SNMGTFGIGS HSSSKKTTFN  240
LNNEEVEAFQ RSHRRTLEDL KIFNGSWVRS LCDPSSTEKW IDVSTHRGKI ATSNSVRVAE  300
GSGIVLKRKR LFLFEDCDHN KSCQDLDLSL SLKATPQTYA NVGLKGKGCL LFGDEHGQDH  360
QDCKSLSLSL SSSSSSRLSL STPTKEDDLR DHNRKRKISV SASTLDLTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-1881135357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-1881135357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-1881135357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-1881135357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00301DAPTransfer from AT2G40260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010534614.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010534614.10.0PREDICTED: uncharacterized protein LOC104810118
TrEMBLD7LEH71e-118D7LEH7_ARALL; Uncharacterized protein
STRINGXP_010534614.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93592136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.11e-118G2-like family protein