PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010534610.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | bHLH | ||||||||
Protein Properties | Length: 250aa MW: 27612 Da PI: 8.6972 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.2 | 3e-13 | 56 | 102 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h ++E+rRRdriNs ++ Lr+l+P++ Kl+Ka+ L +++ +k+L XP_010534610.1 56 RSHRMAEKRRRDRINSHLAALRKLVPNS-----DKLDKAALLATVIQQVKQL 102 68*************************8.....7************999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.205 | 53 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.53E-14 | 53 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.6E-14 | 56 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.39E-12 | 56 | 105 | No hit | No description |
Pfam | PF00010 | 7.9E-11 | 56 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.6E-12 | 59 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS51671 | 8.918 | 150 | 226 | IPR002912 | ACT domain |
CDD | cd04873 | 3.46E-4 | 152 | 220 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
METSYESAKW SGCSAQFLWA LQPEPSESEF HVGFSSSSSG NFPADCGGER ADSLSRSHRM 60 AEKRRRDRIN SHLAALRKLV PNSDKLDKAA LLATVIQQVK QLKQQATESP IFSDLPSESD 120 EVTVNLSNTV PNFESDTQEC KGGDRVLLFR ASFCCEDRPE VLSEIIRVLK KLQLETIQAN 180 VISVGGRTRN NFVLMKKGCG SEENSAASAT ALKQSLGAVL SRITSSSSTT SVCRIRSKRQ 240 RWFLSSHYSQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010534610.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by salicylic acid (SA) treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010534610.1 | 0.0 | PREDICTED: transcription factor bHLH51 | ||||
Swissprot | Q9XEF0 | 1e-107 | BH051_ARATH; Transcription factor bHLH51 | ||||
TrEMBL | A0A384L9H1 | 1e-105 | A0A384L9H1_ARATH; Uncharacterized protein | ||||
TrEMBL | C0SV80 | 1e-105 | C0SV80_ARATH; Uncharacterized protein At2g40200 (Fragment) | ||||
STRING | XP_010534610.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6806 | 25 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40200.1 | 4e-92 | bHLH family protein |
Publications ? help Back to Top | |||
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