PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010534604.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 638aa    MW: 69668.4 Da    PI: 7.9521
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010534604.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.64.3e-08267287526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+ f++ G C+ Gd+C +aHg
  XP_010534604.1 267 PCPEFRK-GSCPKGDSCEYAHG 287
                     8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.201.5E-1365183IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484034.51E-1366155IPR020683Ankyrin repeat-containing domain
SMARTSM002482.2E-473103IPR002110Ankyrin repeat
PfamPF127962.7E-773135IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029711.87773175IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.9237397IPR002110Ankyrin repeat
CDDcd002042.58E-1275171No hitNo description
SMARTSM002485108140IPR002110Ankyrin repeat
PROSITE profilePS5010313.976262289IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-5262288IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.2E-6267289IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-5267287IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4294326IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.085297321IPR000571Zinc finger, CCCH-type
SMARTSM0035628297320IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    Send to blast
MCSGSKSKLF SPETLTEGEL RRQKEQAMSG LLEFAACDDL TAFRREVEEK GLGVDESGFW  60
YCRRVGSNKM GFEERTPLMV AAMYGSTEIL KYIISTGKAD VNRVCGQERV TALHCAVAGC  120
AWSVVEVIKI LLDASAVSNC VDANGNKPSD LVALFSRFVT TPKRKAVELL LRGGVGSASL  180
VDYVLSQEKD GEDSKSLATP TTKYPADASL PDINQGIYGT DEFRMYSFKV KPCSRAYSHD  240
WTECPFVHPG ENARRRDPRK YPYTCVPCPE FRKGSCPKGD SCEYAHGVFE SWLHPAQYKT  300
RLCKDETGCA RKVCFFAHKP EELRPVNAST GSAMFSPRSN CSQTPVSSMD MSVMSPLTLG  360
SSSALSYSSS VSTPPISPLN CNGGSLSPRN GGLWQNRVNN LNVNVTPPAL QLPSSRLKSA  420
LNARDFDIEM ELRLLGLDNQ NGQMGFGSFD SFSSSMASPR QQSLSSSTLS QLQSPSRISQ  480
ISQNMSYHPS SPARKSQQPA PGFDTSAAVA AAVMNSRSSA FAKRSMSFKP TAPSSNLSDW  540
GSPNGKLEWG MQVGDELNKL RRSVSFGIRG NSPSVHMPAT ARDYSDEPDV SWVNSLVKDS  600
AVDGARQLDG QPRSDSVAWE KVPSWAEQMY REHEQIVA
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010534604.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010534604.10.0PREDICTED: zinc finger CCCH domain-containing protein 47-like
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLR0HRW60.0R0HRW6_9BRAS; Uncharacterized protein
STRINGXP_010534604.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein