PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010534544.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 353aa    MW: 38957.7 Da    PI: 6.1877
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010534544.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.25.7e-165095147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd  l ++v ++G+++W++Iar ++  R++k+c++rw + 
   XP_010534544.1 50 KGPWSPEEDVVLTRLVSKFGPRNWSLIARGIP-CRSGKSCRLRWCNQ 95
                     79******************************.***********985 PP
2Myb_DNA-binding57.33.7e-18102146147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r+++T eEd++++ a++ +G++ W++Ia+ ++ gRt++ +k++w++ 
   XP_010534544.1 102 RKPFTDEEDQIIISAHATHGNK-WAAIAKFLP-GRTDNAIKNHWNST 146
                      789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.1684596IPR017930Myb domain
SuperFamilySSF466893.4E-3148143IPR009057Homeodomain-like
SMARTSM007173.5E-134998IPR001005SANT/Myb domain
PfamPF002493.8E-155095IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-2551103IPR009057Homeodomain-like
CDDcd001674.79E-135294No hitNo description
PROSITE profilePS5129426.07397151IPR017930Myb domain
SMARTSM007171.3E-17101149IPR001005SANT/Myb domain
PfamPF002491.5E-16102146IPR001005SANT/Myb domain
CDDcd001672.15E-13104147No hitNo description
Gene3DG3DSA:1.10.10.604.7E-25104150IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MLFYHDGRRD PPAAMAGSDE GLRSAIEAEL AELVGGEAGE PNGGGGSKVK GPWSPEEDVV  60
LTRLVSKFGP RNWSLIARGI PCRSGKSCRL RWCNQLDPCL KRKPFTDEED QIIISAHATH  120
GNKWAAIAKF LPGRTDNAIK NHWNSTLRRK YADPWKFKSG IKKEKVENIP TPSPEEQLSQ  180
GEKTTSESPE LNDVTMDDSS NESREHNIYR PMARIGAFTS LRSGYREQHI VPCEGPLAQA  240
SRPDSAGGVF LQSLSDEPNI PAKCGHGCDT YPSKSLSSSR NSLLGPEFVD YEETSTLLDL  300
ELISIATDLN NIAWIKSGLD NTLVRESEQS LKADDFQAKF TGMMNKTRLF CTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C4e-394915057158MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-394915057158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for male gametophyte (pollen) development. {ECO:0000269|PubMed:22101548}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010534544.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: May be the target of the microRNA (miRNA) MIR393a. {ECO:0000269|PubMed:15258262}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010534544.10.0PREDICTED: transcription factor MYB86-like
SwissprotO041921e-116MYB25_ARATH; Transcription factor MYB25
TrEMBLE4MVW31e-153E4MVW3_EUTHA; mRNA, clone: RTFL01-04-P04
TrEMBLV4LQU61e-153V4LQU6_EUTSA; Uncharacterized protein
STRINGXP_010534544.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56382747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.11e-140myb domain protein 109
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]