PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010534485.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Dof
Protein Properties Length: 285aa    MW: 31258.6 Da    PI: 9.6103
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010534485.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.41.8e-391473362
          zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                    e+al+cprCdstntkfCy+nny+lsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+
  XP_010534485.1 14 EAALNCPRCDSTNTKFCYFNNYNLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 73
                    6789*****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-32166IPR003851Zinc finger, Dof-type
PfamPF027018.2E-331671IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.8231771IPR003851Zinc finger, Dof-type
PROSITE patternPS0136101955IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MVERARLAKI PLPEAALNCP RCDSTNTKFC YFNNYNLSQP RHFCKTCRRY WTRGGALRNV  60
PVGGGCRRNK RSKSNGRSGS RSKSTVVVAS DHHHQATTSS SSAPSSHTSY TNPSKRLNVG  120
QISGLNPNLP NLSPLQGPRD YGMNNIGLDL GGIRLSNAIT GNASGGLLDH WRPSLHQFPF  180
SINTAGLGQS SSVLYPLLEG NEGANQEQET GYANQLRSKQ QLMDMFTQPD IVKAEENDHH  240
RNGVNNLSAN ININLTIDDQ YPSSWGGNNN SWNTDLPGFT FNNSL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. {ECO:0000269|PubMed:12887587}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010534485.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin and salicylic acid (SA). Repressed by jasmonic acid (JA). {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:12887587}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010534484.10.0PREDICTED: dof zinc finger protein DOF3.6-like
SwissprotQ9M2U15e-92DOF36_ARATH; Dof zinc finger protein DOF3.6
TrEMBLA0A1J3JQK21e-105A0A1J3JQK2_NOCCA; Dof zinc finger protein DOF3.6
STRINGXP_010534484.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.29e-78OBF-binding protein 3