PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010534484.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | Dof | ||||||||
Protein Properties | Length: 350aa MW: 38278.2 Da PI: 9.1967 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.9 | 2.6e-39 | 79 | 138 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+al+cprCdstntkfCy+nny+lsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+ XP_010534484.1 79 EAALNCPRCDSTNTKFCYFNNYNLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 138 6789*****************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-34 | 62 | 131 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.1E-32 | 81 | 136 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.823 | 82 | 136 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 84 | 120 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MVFSSLPLYQ FDPPNWQQQA NQQPTGFTND HHNPNNFPPP VPSADLPPPQ ASGGATVGQT 60 VRPNSMVERA RLAKIPLPEA ALNCPRCDST NTKFCYFNNY NLSQPRHFCK TCRRYWTRGG 120 ALRNVPVGGG CRRNKRSKSN GRSGSRSKST VVVASDHHHQ ATTSSSSAPS SHTSYTNPSK 180 RLNVGQISGL NPNLPNLSPL QGPRDYGMNN IGLDLGGIRL SNAITGNASG GLLDHWRPSL 240 HQFPFSINTA GLGQSSSVLY PLLEGNEGAN QEQETGYANQ LRSKQQLMDM FTQPDIVKAE 300 ENDHHRNGVN NLSANININL TIDDQYPSSW GGNNNSWNTD LPGFTFNNSL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. {ECO:0000269|PubMed:12887587}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010534484.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin and salicylic acid (SA). Repressed by jasmonic acid (JA). {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:12887587}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010534484.1 | 0.0 | PREDICTED: dof zinc finger protein DOF3.6-like | ||||
Swissprot | Q9M2U1 | 1e-106 | DOF36_ARATH; Dof zinc finger protein DOF3.6 | ||||
TrEMBL | D7LV36 | 1e-115 | D7LV36_ARALL; Obf-binding protein 3 | ||||
STRING | XP_010534484.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1713 | 28 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55370.2 | 9e-80 | OBF-binding protein 3 |