PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010534402.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family SBP
Protein Properties Length: 1046aa    MW: 116085 Da    PI: 8.4129
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010534402.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.55.3e-40143219278
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     Cqv+ C++dls+ak+yhrrhkvCevhska+++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+
  XP_010534402.1 143 CQVDCCTEDLSTAKDYHRRHKVCEVHSKASKALVGNQMQRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNRRRRKTQP 219
                     **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.2E-33136204IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.043140217IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.31E-36141222IPR004333Transcription factor, SBP-box
PfamPF031103.1E-28143216IPR004333Transcription factor, SBP-box
CDDcd002043.19E-7804940No hitNo description
SuperFamilySSF484034.97E-7804942IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.1E-6807945IPR020683Ankyrin repeat-containing domain
PROSITE profilePS502978.534887940IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1046 aa     Download sequence    Send to blast
MDMDEVGAQV AAPVFIQQSI SPIGRKRDLY YQIPNLHPHW LPQPQTHTLQ LRDDWNPKTW  60
DWDCRRFEAK PVDSEVVRLD VSVKSSSNSG LTSRNGGGES EGDERSLDLN LGSCPNPVEE  120
TQPNRPNKKV RPGSPGGSNY PKCQVDCCTE DLSTAKDYHR RHKVCEVHSK ASKALVGNQM  180
QRFCQQCSRF HLLSEFDEGK RSCRRRLAGH NRRRRKTQPE EIRTRAVVPG NRDNNSNPNP  240
NMDLVALLTA LACAQAAGRN EVKPIESPTV PDGEQLLQML NKINSLPLPT DLFSKLNNIG  300
GLAGKNLQHS LANPQNDTNG TSQSTMDLLA VLSSTLASSS PDALALLSQK RDEVNNSDKT  360
KLASSDHPGI TANVEKRILD VPSAGGERSS SSHQSPSQDS DSHVQDTRSS LSLQLFTSSP  420
DNESGPTVAF SRKYYSSASS NPLEDRSPSS SPVMQELFPL QTSPETMRLK NEKNTGFRTG  480
CLPLELFGAS NRGAENNIFK GFGHQSGYAS SGSDNSPPSL NSDSQDRTGR IVFKLLGKDP  540
SHLPGTLRTQ IYNWLTNIPS EMESYIRPGC VVLSVYVAMS ASAWQQLEEN LQERVRFLLQ  600
DSRSDFWRNS RFLVNTGRRV ASYKDGKIRL SKSWRTWNSP ELISVSPVAV VAGEETTLLV  660
KGRNLTNDGI KIRCAHMGNY TLLKVAGSAC RKAEFDELNV NSFRIQGPSH SFLGRCFIEV  720
ENGFRVDSFP LIIANATICK ELNHLEGKFH HRDITEQAHS SPTSREEVLR FLNELGWLFQ  780
KKKHMSSDFQ GDSDFALTRF KFLLVFSVER DYCTLVRTIL DMVVDRNSDR DGLNTESWDI  840
LSEIQLLNRA VKRRSPKMAE MLIHYSVNPS PDSSKSFIFP PNVSGPGGIT PLHLAACSSG  900
SEDMIDVLTN DPQEIGLTSW NTLRDSSGQT PYSYAAVRNN HGYNTLVARK LADKRNLQVS  960
MNIGIEGIEQ MMGRSKSKRS CETCGTVALK YGRRVSGSNR LFPTPLIHSM LAVAAVCVCV  1020
CVFMHAFPTV RQGGHFSWGG LDYGPM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-31133216184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1848853RAVKRR
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269|PubMed:15703061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010534402.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010534402.10.0PREDICTED: squamosa promoter-binding-like protein 14 isoform X1
SwissprotQ8RY950.0SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBLA0A1J3JYZ90.0A0A1J3JYZ9_NOCCA; Squamosa promoter-binding-like protein 14
STRINGXP_010534402.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39992554
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20980.10.0squamosa promoter binding protein-like 14
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Liu J, et al.
    Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.).
    Front Plant Sci, 2016. 7: p. 21
    [PMID:26870051]