PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010534343.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 303aa    MW: 33743.1 Da    PI: 7.1341
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010534343.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.72.1e-08209256455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++iN ++  L++l+P +    +k    a++L + +++++ Lq
  XP_010534343.1 209 SHSLAERARREKINARMKLLQDLVPGC----NKVSGTAMVLDEIINHVHFLQ 256
                     8*************************9....455678999999999999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.81E-16203273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.35E-9203260No hitNo description
PROSITE profilePS5088814.386205255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-16205274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-6209256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-9211261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MERSAVVGAR SVDGPPELSE NGFGLVQFNE EIQRLMSLRQ CTGSSFTALL ELPPTQVVEL  60
LHSTDPGDYP AVVVVGTEDL KPTFTAPVAF PPGVAVTECF SRFPILAGQQ KGGDSPATSS  120
VPSNSNPNNE VVKNEPMEMD TSYRLENQNQ NQNQTQRPVK RKEEERKDKQ STKKSKRSAN  180
AKNSEEEDKD KDKLPYVHVR ARRGQATDSH SLAERARREK INARMKLLQD LVPGCNKVSG  240
TAMVLDEIIN HVHFLQRQVE FLSMRLAAVN PRIDTNLDNI LAAELKRKVK LETGHSLFTE  300
EVL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010534343.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010534341.10.0PREDICTED: transcription factor bHLH48-like isoform X2
RefseqXP_010534342.10.0PREDICTED: transcription factor bHLH48-like isoform X2
RefseqXP_010534343.10.0PREDICTED: transcription factor bHLH48-like isoform X2
SwissprotQ3EAI14e-70BH060_ARATH; Transcription factor bHLH60
TrEMBLA0A2R6R5623e-86A0A2R6R562_ACTCH; Transcription factor bHLH60 like
TrEMBLA0A2R6S2383e-86A0A2R6S238_ACTCH; Transcription factor bHLH48 like
STRINGXP_010534340.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.21e-64bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]