PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010534337.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 331aa MW: 36992.8 Da PI: 9.0714 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31.8 | 3e-10 | 46 | 80 | 5 | 39 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLe 39 k rr+++NReAAr+sR+RKka++++Le+ +L+ XP_010534337.1 46 KTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLT 80 7889************************9655555 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 7.9E-8 | 36 | 89 | No hit | No description |
SMART | SM00338 | 7.9E-5 | 42 | 134 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.048 | 44 | 88 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 3.4E-7 | 46 | 82 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.0E-7 | 46 | 87 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 49 | 64 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 5.5E-35 | 128 | 204 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 331 aa Download sequence Send to blast |
MADTSPRTSI STDADTDHRD QMFNGGQLVV AASDSSDRSK DKLDQKTLRR LAQNREAARK 60 SRLRKKAYVQ QLENSRLKLT QLEQEFQKSR QQGIFMSSSG DQAHSTGGNG AMAFDAEYSR 120 WQEEKSRHMN ELRSALNAHA SDAELRIIVD ALMAHYEELF RIKSNAAKND VFHLLSGMWK 180 TPAERCFLWL GGFRSSELLK LVASQLEPLT EQQSIGIINL QQSSQQAEDA LSQGMDALQQ 240 SLAETLSNGT LGSSGSSGNV ANYMGQMAMA MGKLGTLEGF IRQADNLRLQ MLQQMLRILT 300 TRQSARALLA IHEYFSRLCA LSSLWIARPR E |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010534337.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010534337.1 | 0.0 | PREDICTED: transcription factor TGA6-like isoform X2 | ||||
Swissprot | Q39140 | 0.0 | TGA6_ARATH; Transcription factor TGA6 | ||||
TrEMBL | A0A3Q0ERI9 | 0.0 | A0A3Q0ERI9_VIGRR; transcription factor TGA2.2 isoform X3 | ||||
TrEMBL | E4MX78 | 0.0 | E4MX78_EUTHA; mRNA, clone: RTFL01-10-O14 | ||||
TrEMBL | V4KRR3 | 0.0 | V4KRR3_EUTSA; Uncharacterized protein | ||||
STRING | XP_010534328.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G12250.2 | 1e-176 | TGACG motif-binding factor 6 |