PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010534200.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

Nin-like

Protein Properties

Length: 819aa MW: 92077 Da PI: 6.0277

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010534200.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.7	5.6e-29	522	572	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+++l++l++yF++++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rkik++ XP_010534200.1 522 EKTVTLDVLRQYFAGSLKDAAKSLGVCPTTLKRICRQHGIQRWPSRKIKKV 572 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.575	511	592	IPR003035	RWP-RK domain
Pfam	PF02042	2.3E-26	524	572	IPR003035	RWP-RK domain
SuperFamily	SSF54277	9.57E-23	715	808	No hit	No description
SMART	SM00666	9.0E-23	724	807	IPR000270	PB1 domain
PROSITE profile	PS51745	26.338	724	807	IPR000270	PB1 domain
CDD	cd06407	3.53E-40	725	805	No hit	No description
Gene3D	G3DSA:3.10.20.240	8.9E-20	725	804	No hit	No description
Pfam	PF00564	6.1E-18	726	805	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 819 aa Download sequence Send to blast
MGDNVLQPVM DIEFMDELLF DGCWLETMEE SEFLDFSPST SINPFDPSPL TRSPPQDTQT 60 ISSSDISQMF CQDIAERSGL DEAEGNRRWW IGPTRGSPGG PGCSVMERLV QALKYIKDFT 120 RERGSLIQLW VPVNRGGKRV LTTKEQPFAI DPICRKLASY REISESFHFS AEMEDSKEIP 180 EWSPDVRFFR SEEYPRVHHA QDCDVRGTLA IPVFEQCSKI CLGVIEIVMT TQMVKSRPEL 240 ETISRALQAV DLRSTEVPVP SPAKARDISY RAALPEIRNL LRCACETHKL PLAQTWVSCL 300 RQDKPGCRHN IDNYVHCVST VDDACFVFDP TVQEFHEACS EHHLLKGQGV SGQAFLTNQP 360 CFSPDVTVFK KTEYPLSHHA TVFGLRAAVS IRLRSILTGS ADFVLEFFLP KGCRDLEEQR 420 TMLNSLSTIV ANMSRSLRTV SDKELEEEAE SMRGEVIERE EMVPKVEDNL HESSSWNTES 480 RQIKSDLRKL GQVSNGGGAS EIGEQNGGGF SIMAEKKRAK TEKTVTLDVL RQYFAGSLKD 540 AAKSLGVCPT TLKRICRQHG IQRWPSRKIK KVGRSLQKIQ RVIASVEGVS GPLPVSSFYP 600 NFPNTLQPAK NCPAPFLLQH GSHVKSPSSS CTQSSSSSQC YSSETQLNNL PVSRKSCSAE 660 DTVNGENSLV NDCATKRTRS EAEVHSLSRE ETTTFFSRLQ SHDSLKENPS LENTHLPSSQ 720 DEDFLRMKVT YGDEKIRFRM RNSCRLKDLS REIAKRYNID DMSRYDLKYL DDDNEWVLLT 780 CDDDVEECID VCGSSPGHTI KLLLQVCSFH LPERSSVSG

Sequence ? help Back to Top

Protein Sequence Length: 819 aa Download sequence Send to blast

MGDNVLQPVM DIEFMDELLF DGCWLETMEE SEFLDFSPST SINPFDPSPL TRSPPQDTQT  60
ISSSDISQMF CQDIAERSGL DEAEGNRRWW IGPTRGSPGG PGCSVMERLV QALKYIKDFT  120
RERGSLIQLW VPVNRGGKRV LTTKEQPFAI DPICRKLASY REISESFHFS AEMEDSKEIP  180
EWSPDVRFFR SEEYPRVHHA QDCDVRGTLA IPVFEQCSKI CLGVIEIVMT TQMVKSRPEL  240
ETISRALQAV DLRSTEVPVP SPAKARDISY RAALPEIRNL LRCACETHKL PLAQTWVSCL  300
RQDKPGCRHN IDNYVHCVST VDDACFVFDP TVQEFHEACS EHHLLKGQGV SGQAFLTNQP  360
CFSPDVTVFK KTEYPLSHHA TVFGLRAAVS IRLRSILTGS ADFVLEFFLP KGCRDLEEQR  420
TMLNSLSTIV ANMSRSLRTV SDKELEEEAE SMRGEVIERE EMVPKVEDNL HESSSWNTES  480
RQIKSDLRKL GQVSNGGGAS EIGEQNGGGF SIMAEKKRAK TEKTVTLDVL RQYFAGSLKD  540
AAKSLGVCPT TLKRICRQHG IQRWPSRKIK KVGRSLQKIQ RVIASVEGVS GPLPVSSFYP  600
NFPNTLQPAK NCPAPFLLQH GSHVKSPSSS CTQSSSSSQC YSSETQLNNL PVSRKSCSAE  660
DTVNGENSLV NDCATKRTRS EAEVHSLSRE ETTTFFSRLQ SHDSLKENPS LENTHLPSSQ  720
DEDFLRMKVT YGDEKIRFRM RNSCRLKDLS REIAKRYNID DMSRYDLKYL DDDNEWVLLT  780
CDDDVEECID VCGSSPGHTI KLLLQVCSFH LPERSSVSG

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010534200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010534200.1	0.0	PREDICTED: protein NLP4-like
Swissprot	Q9LE38	0.0	NLP4_ARATH; Protein NLP4
TrEMBL	A0A1J3E447	0.0	A0A1J3E447_NOCCA; Protein NLP4
STRING	XP_010534200.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3461	26	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein