PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010534127.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MIKC_MADS
Protein Properties Length: 210aa    MW: 23719.6 Da    PI: 8.2961
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010534127.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.36.3e-26958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    kr+en   rqvtf+kRr+g+lKKA+ELSvLCdae+ v+ifs++gklye +
  XP_010534127.1  9 KRVENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVLIFSPQGKLYELA 58
                    799********************************************965 PP
2K-box578.7e-209918019100
           K-box  19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                      e++ L++eie+Lq+ +R + G + + + l eL  Le++Le  + +iRs+K+++ll++i+ l+ ke  l+ +nk+Lr k+ee
  XP_010534127.1  99 DEINMLRQEIEMLQKGIRYMFGGGDGAMGLDELLLLEKHLEYWICQIRSRKMDILLQEIQSLRDKEGVLKAANKYLRDKMEE 180
                     5899***************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.5E-36160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.815161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-27177IPR002100Transcription factor, MADS-box
CDDcd002652.83E-39274No hitNo description
PRINTSPR004043.4E-27323IPR002100Transcription factor, MADS-box
PfamPF003193.4E-231056IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.45894184IPR002487Transcription factor, K-box
PfamPF014862.8E-2099178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MARGKVQLKR VENPVHRQVT FCKRRAGLLK KAKELSVLCD AEIGVLIFSP QGKLYELATK  60
GTMEGLIEKY LKCTTASASS ASVSASAAPH EPPNLDPIDE INMLRQEIEM LQKGIRYMFG  120
GGDGAMGLDE LLLLEKHLEY WICQIRSRKM DILLQEIQSL RDKEGVLKAA NKYLRDKMEE  180
NNNSMIAANF APMTTNYSYP LTMPNEIFQY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-151102189MEF2C
5f28_B1e-151102189MEF2C
5f28_C1e-151102189MEF2C
5f28_D1e-151102189MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that regulates root development by controlling cell proliferation in root meristem. May mediate responses to auxin in the root. May act as promoter of the flowering transition through up-regulation of SOC, FT and LFY. {ECO:0000269|PubMed:18203871}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010534127.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin in root phloem. {ECO:0000269|PubMed:18203871}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010534127.11e-156PREDICTED: agamous-like MADS-box protein AGL12
SwissprotQ388411e-113AGL12_ARATH; Agamous-like MADS-box protein AGL12
TrEMBLA0A178W2491e-112A0A178W249_ARATH; XAL1
STRINGXP_010534127.11e-156(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70522641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.11e-104AGAMOUS-like 12
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Pacheco-Escobedo MA, et al.
    Longitudinal zonation pattern in Arabidopsis root tip defined by a multiple structural change algorithm.
    Ann. Bot., 2018.
    [PMID:27358290]
  3. García-Cruz KV, et al.
    The MADS-box XAANTAL1 increases proliferation at the Arabidopsis root stem-cell niche and participates in transition to differentiation by regulating cell-cycle components.
    Ann. Bot., 2018.
    [PMID:27474508]