PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010534106.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

TCP

Protein Properties

Length: 391aa MW: 40625.9 Da PI: 9.0351

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010534106.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	130.6	1.5e-40	79	173	3	98
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaak 96 ++k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ ++s +ss+ +++++ +++a+ XP_010534106.1 79 AAKKPSKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLSVSLRSSGT--TISASPSKSAP 171 6899****************************************************************88865555555555..33322222222 PP TCP 97 sk 98 + XP_010534106.1 172 LS 173 22 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	7.4E-38	84	181	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.844	84	138	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MESRNDQNLH GRKQEAGTAT AALHLSSAEN LPPQRSLVSF MGSVSGQNVA AASSAVSTST 60 TSSSTNTSSG GSLTVVKSAA KKPSKDRHTK VDGRGRRIRM PAMCAARVFQ LTRELGHKSD 120 GETIEWLLQQ AEPAIIAATG TGTIPANFST LSVSLRSSGT TISASPSKSA PLSFHSAGLS 180 LYDDLNATNG SSVAAVDASR KLLNAAAQNA TVFGFHHQIY PPILSDASMR NMTDLTKPYR 240 EDLFKESSVA ADPSGSSPKT GRTQEPETGQ GRATANFMPQ PMWAVAPATT NGGGTFWMLP 300 MGGSGGGAVQ EQQQQQHMWA FDAGHYSGSG RAGSMMSIGG QQLGLGVTES NMAAIGGGRG 360 GLAMTLDQHQ QQQHQTQRGE SGGDGNATDN S

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MESRNDQNLH GRKQEAGTAT AALHLSSAEN LPPQRSLVSF MGSVSGQNVA AASSAVSTST  60
TSSSTNTSSG GSLTVVKSAA KKPSKDRHTK VDGRGRRIRM PAMCAARVFQ LTRELGHKSD  120
GETIEWLLQQ AEPAIIAATG TGTIPANFST LSVSLRSSGT TISASPSKSA PLSFHSAGLS  180
LYDDLNATNG SSVAAVDASR KLLNAAAQNA TVFGFHHQIY PPILSDASMR NMTDLTKPYR  240
EDLFKESSVA ADPSGSSPKT GRTQEPETGQ GRATANFMPQ PMWAVAPATT NGGGTFWMLP  300
MGGSGGGAVQ EQQQQQHMWA FDAGHYSGSG RAGSMMSIGG QQLGLGVTES NMAAIGGGRG  360
GLAMTLDQHQ QQQHQTQRGE SGGDGNATDN S

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00228	DAP	Transfer from AT1G72010	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010534106.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010534106.1	0.0	PREDICTED: transcription factor TCP22-like
Swissprot	Q9C7G4	1e-126	TCP22_ARATH; Transcription factor TCP22
TrEMBL	R0I9T3	1e-131	R0I9T3_9BRAS; Uncharacterized protein
STRING	XP_010534106.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7053	24	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72010.1	1e-118	TCP family protein

Publications ? help Back to Top
Wu JF, et al. LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. Nat Commun, 2016. 7: p. 13181 [PMID:27734958] Dong H, et al. Ubiquitylation activates a peptidase that promotes cleavage and destabilization of its activating E3 ligases and diverse growth regulatory proteins to limit cell proliferation in Arabidopsis. Genes Dev., 2017. 31(2): p. 197-208 [PMID:28167503]