PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010533978.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family TCP
Protein Properties Length: 391aa    MW: 44548.5 Da    PI: 9.3309
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010533978.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP140.81.1e-431433062134
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............................... 65 
                     + k+drhski+T++g+RdRR+Rls+e+a++fF Lqd+LGfdk+skt++WLl+qakp+ik+l+++                               
  XP_010533978.1 143 TSKTDRHSKIYTAKGPRDRRMRLSLEVAREFFGLQDMLGFDKASKTVDWLLTQAKPEIKKLASNlqqrvnseesqtrradlgevasgwirdagsk 237
                     679*************************************************************8887777766666666666666666655544 PP

             TCP  66 .ssssaseceaesssssasnsssg....................kaaksaakskksqksaasalnlakesrakarararertrekmrikn 134
                      +                     +                    + ++ ++k+++sq+++  +++l k+ rakar+ra+ert+ekm++++
  XP_010533978.1 238 iN---------------------TwtnntshvlcevasastnkiDGKSGKEKKNRSQSRNPIFRKLPKDARAKARERAKERTKEKMMMRQ 306
                     42.....................0222333333333344444443444444566666666667*************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.9E-42143304IPR005333Transcription factor, TCP
PROSITE profilePS5136934.783145203IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.47284301IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MASNPKRDMN NTNDFVFCPY NHHSSPQRLP TFSPSPSFND IFDSANPIPS DDHHARHRHH  60
HLQDSSPSSL FKFDPESLYA VFLQPKNDHH HCHHQRQPSL DLPPLNNPVE DQSVEASETI  120
THMKDSKKIQ SSRGPAQASK KRTSKTDRHS KIYTAKGPRD RRMRLSLEVA REFFGLQDML  180
GFDKASKTVD WLLTQAKPEI KKLASNLQQR VNSEESQTRR ADLGEVASGW IRDAGSKINT  240
WTNNTSHVLC EVASASTNKI DGKSGKEKKN RSQSRNPIFR KLPKDARAKA RERAKERTKE  300
KMMMRQITSP EDAVYMKNSE VNDHLGTNSN WSSFETGEDL VRETEEPSPN NRFVACNNIG  360
IIQEGDIGQE SLDIINNWSP FPVFNYHQNQ G
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010533978.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010533978.10.0PREDICTED: transcription factor TCP18-like isoform X4
STRINGXP_010533974.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.21e-67TCP family protein