PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010533978.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

TCP

Protein Properties

Length: 391aa MW: 44548.5 Da PI: 9.3309

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010533978.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	140.8	1.1e-43	143	306	2	134
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............................... 65 + k+drhski+T++g+RdRR+Rls+e+a++fF Lqd+LGfdk+skt++WLl+qakp+ik+l+++ XP_010533978.1 143 TSKTDRHSKIYTAKGPRDRRMRLSLEVAREFFGLQDMLGFDKASKTVDWLLTQAKPEIKKLASNlqqrvnseesqtrradlgevasgwirdagsk 237 679***********************************************************8887777766666666666666666655544 PP TCP 66 .ssssaseceaesssssasnsssg....................kaaksaakskksqksaasalnlakesrakarararertrekmrikn 134 + + + ++ ++k+++sq+++ +++l k+ rakar+ra+ert+ekm++++ XP_010533978.1 238 iN---------------------TwtnntshvlcevasastnkiDGKSGKEKKNRSQSRNPIFRKLPKDARAKARERAKERTKEKMMMRQ 306 42.....................0222333333333344444443444444566666666667***********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.9E-42	143	304	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	34.783	145	203	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	10.47	284	301	IPR017888	CYC/TB1, R domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000032	Biological Process	regulation of secondary shoot formation
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MASNPKRDMN NTNDFVFCPY NHHSSPQRLP TFSPSPSFND IFDSANPIPS DDHHARHRHH 60 HLQDSSPSSL FKFDPESLYA VFLQPKNDHH HCHHQRQPSL DLPPLNNPVE DQSVEASETI 120 THMKDSKKIQ SSRGPAQASK KRTSKTDRHS KIYTAKGPRD RRMRLSLEVA REFFGLQDML 180 GFDKASKTVD WLLTQAKPEI KKLASNLQQR VNSEESQTRR ADLGEVASGW IRDAGSKINT 240 WTNNTSHVLC EVASASTNKI DGKSGKEKKN RSQSRNPIFR KLPKDARAKA RERAKERTKE 300 KMMMRQITSP EDAVYMKNSE VNDHLGTNSN WSSFETGEDL VRETEEPSPN NRFVACNNIG 360 IIQEGDIGQE SLDIINNWSP FPVFNYHQNQ G

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MASNPKRDMN NTNDFVFCPY NHHSSPQRLP TFSPSPSFND IFDSANPIPS DDHHARHRHH  60
HLQDSSPSSL FKFDPESLYA VFLQPKNDHH HCHHQRQPSL DLPPLNNPVE DQSVEASETI  120
THMKDSKKIQ SSRGPAQASK KRTSKTDRHS KIYTAKGPRD RRMRLSLEVA REFFGLQDML  180
GFDKASKTVD WLLTQAKPEI KKLASNLQQR VNSEESQTRR ADLGEVASGW IRDAGSKINT  240
WTNNTSHVLC EVASASTNKI DGKSGKEKKN RSQSRNPIFR KLPKDARAKA RERAKERTKE  300
KMMMRQITSP EDAVYMKNSE VNDHLGTNSN WSSFETGEDL VRETEEPSPN NRFVACNNIG  360
IIQEGDIGQE SLDIINNWSP FPVFNYHQNQ G

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010533978.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010533978.1	0.0	PREDICTED: transcription factor TCP18-like isoform X4
STRING	XP_010533974.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18550.2	1e-67	TCP family protein