PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010533975.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | TCP | ||||||||
Protein Properties | Length: 397aa MW: 45256.3 Da PI: 9.1549 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 137.9 | 8.7e-43 | 143 | 312 | 2 | 134 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............................... 65 + k+drhski+T++g+RdRR+Rls+e+a++fF Lqd+LGfdk+skt++WLl+qakp+ik+l+++ XP_010533975.1 143 TSKTDRHSKIYTAKGPRDRRMRLSLEVAREFFGLQDMLGFDKASKTVDWLLTQAKPEIKKLASNlqqrvnseesqtrradlgevasgwirdagsk 237 679*************************************************************9888877777777777766666666654444 PP TCP 66 .......ssssaseceaesssssasnsssg....................kaaksaakskksqksaasalnlakesrakarararertrekmrik 133 + + + ++ ++k+++sq+++ +++l k+ rakar+ra+ert+ekm+++ XP_010533975.1 238 intcmrtE---------------------SwtnntshvlcevasastnkiDGKSGKEKKNRSQSRNPIFRKLPKDARAKARERAKERTKEKMMMR 311 43333331.....................0222222333444444445554444444666666666667*************************9 PP TCP 134 n 134 + XP_010533975.1 312 Q 312 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.6E-42 | 143 | 310 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 34.783 | 145 | 203 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 10.47 | 290 | 307 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence Send to blast |
MASNPKRDMN NTNDFVFCPY NHHSSPQRLP TFSPSPSFND IFDSANPIPS DDHHARHRHH 60 HLQDSSPSSL FKFDPESLYA VFLQPKNDHH HCHHQRQPSL DLPPLNNPVE DQSVEASETI 120 THMKDSKKIQ SSRGPAQASK KRTSKTDRHS KIYTAKGPRD RRMRLSLEVA REFFGLQDML 180 GFDKASKTVD WLLTQAKPEI KKLASNLQQR VNSEESQTRR ADLGEVASGW IRDAGSKINT 240 CMRTESWTNN TSHVLCEVAS ASTNKIDGKS GKEKKNRSQS RNPIFRKLPK DARAKARERA 300 KERTKEKMMM RQITSPEDAV YMKNSEVNDH LGTNSNWSSF ETGEDLVRET EEPSPNNRFV 360 ACNNIGIIQE GDIGQESLDI INNWSPFPVF NYHQNQG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010533975.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010533975.1 | 0.0 | PREDICTED: transcription factor TCP18-like isoform X2 | ||||
STRING | XP_010533974.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18550.2 | 8e-67 | TCP family protein |