PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010533974.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family TCP
Protein Properties Length: 403aa    MW: 45844.9 Da    PI: 8.9367
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010533974.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP137.51.1e-421433182134
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............................... 65 
                     + k+drhski+T++g+RdRR+Rls+e+a++fF Lqd+LGfdk+skt++WLl+qakp+ik+l+++                               
  XP_010533974.1 143 TSKTDRHSKIYTAKGPRDRRMRLSLEVAREFFGLQDMLGFDKASKTVDWLLTQAKPEIKKLASNlqqrvnseesqtrfaiaegradlgevasgwi 237
                     679*************************************************************9999988888888888888888887777777 PP

             TCP  66 ................ssssaseceaesssssasnsssg.................kaaksaakskksqksaasalnlakesrakarararertr 127
                                     +                     +                 + ++ ++k+++sq+++  +++l k+ rakar+ra+ert+
  XP_010533974.1 238 rdagskintcmrteswT---------------------NntshvlcevasastnkiDGKSGKEKKNRSQSRNPIFRKLPKDARAKARERAKERTK 311
                     76554444444332221.....................0222233333333444444444444666666666667******************** PP

             TCP 128 ekmrikn 134
                     ekm++++
  XP_010533974.1 312 EKMMMRQ 318
                     *****96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.3E-41143316IPR005333Transcription factor, TCP
PROSITE profilePS5136934.783145203IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.47296313IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MASNPKRDMN NTNDFVFCPY NHHSSPQRLP TFSPSPSFND IFDSANPIPS DDHHARHRHH  60
HLQDSSPSSL FKFDPESLYA VFLQPKNDHH HCHHQRQPSL DLPPLNNPVE DQSVEASETI  120
THMKDSKKIQ SSRGPAQASK KRTSKTDRHS KIYTAKGPRD RRMRLSLEVA REFFGLQDML  180
GFDKASKTVD WLLTQAKPEI KKLASNLQQR VNSEESQTRF AIAEGRADLG EVASGWIRDA  240
GSKINTCMRT ESWTNNTSHV LCEVASASTN KIDGKSGKEK KNRSQSRNPI FRKLPKDARA  300
KARERAKERT KEKMMMRQIT SPEDAVYMKN SEVNDHLGTN SNWSSFETGE DLVRETEEPS  360
PNNRFVACNN IGIIQEGDIG QESLDIINNW SPFPVFNYHQ NQG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010533974.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010533974.10.0PREDICTED: transcription factor TCP18-like isoform X1
STRINGXP_010533974.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72692742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.18e-67TCP family protein