PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010533876.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 347aa    MW: 37407 Da    PI: 4.8628
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010533876.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.85.9e-194792147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEde l ++v ++G+++W++Iar ++ gR++k+c++rw + 
   XP_010533876.1 47 KGPWSPEEDEVLTRLVSKFGPRNWSLIARGIP-GRSGKSCRLRWCNQ 92
                     79******************************.***********985 PP
2Myb_DNA-binding52.61.1e-1699143147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r+++T eEd +++ a++  G++ W++Ia+ ++ gRt++ +k++w++ 
   XP_010533876.1  99 RKPFTDEEDRIIITAHAINGNK-WAAIAKLLP-GRTDNAIKNHWNST 143
                      789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.64293IPR017930Myb domain
SuperFamilySSF466891.11E-3145140IPR009057Homeodomain-like
SMARTSM007172.1E-164695IPR001005SANT/Myb domain
PfamPF002499.9E-184792IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-2748100IPR009057Homeodomain-like
CDDcd001672.25E-154991No hitNo description
PROSITE profilePS5129425.71894148IPR017930Myb domain
SMARTSM007171.7E-1698146IPR001005SANT/Myb domain
PfamPF002497.0E-1599143IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-23101147IPR009057Homeodomain-like
CDDcd001673.53E-12101144No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MEGQIPPPYA IADSDEGLSG AIEAEIAALG GGAGESNGGG GGGSKVKGPW SPEEDEVLTR  60
LVSKFGPRNW SLIARGIPGR SGKSCRLRWC NQLDPCLKRK PFTDEEDRII ITAHAINGNK  120
WAAIAKLLPG RTDNAIKNHW NSTLRRKYAD LWKNGQWKFN PAVTAVKEEE KLEIIPKASP  180
EEQLPPGESD TSKPPELDDV VMDNGSNEAQ EQATEEGNSK HSVCRPAAHV SAFTAYKPGS  240
PMTGYTELHI VPCAGPLVQA SGPNSFGGIF LQSLYEEPNV PTRCGHGCGD CPTKNLSPRT  300
SLLGPEFVDC EEPSALLDQE LISIATDLNN MAWIKSGLDN SLLREAW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-42461473104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for male gametophyte (pollen) development. {ECO:0000269|PubMed:22101548}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010533876.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: May be the target of the microRNA (miRNA) MIR393a. {ECO:0000269|PubMed:15258262}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010533876.10.0PREDICTED: myb-related protein Myb4-like
SwissprotO041921e-105MYB25_ARATH; Transcription factor MYB25
TrEMBLE4MVW31e-146E4MVW3_EUTHA; mRNA, clone: RTFL01-04-P04
TrEMBLV4LQU61e-146V4LQU6_EUTSA; Uncharacterized protein
STRINGXP_010533876.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56382747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.11e-141myb domain protein 109
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]