PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010533798.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | WRKY | ||||||||
Protein Properties | Length: 543aa MW: 59216 Da PI: 5.737 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.8 | 6.8e-31 | 312 | 370 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+ XP_010533798.1 312 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAtGCPVRKQVQRCAEDKSILITTYEGNHNHP 370 7***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.5E-34 | 296 | 372 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.92E-28 | 304 | 372 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.838 | 306 | 372 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-37 | 311 | 371 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.9E-27 | 313 | 370 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0080169 | Biological Process | cellular response to boron-containing substance deprivation | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 543 aa Download sequence Send to blast |
MDRGWGGLTL DSQSPDLINP NCRLKFPNSP VSDAPQKTEL FRFPVSFARF RDREDDHFSS 60 TGDDDNDRKV PSEVDFFADK KYMVLRGSDG GDGLRVKEED GDGRTDVNTG LNLLTTGNNT 120 GSDQSVIDDG ISADMEEKRT KNELAELQLQ LQRMNSENRK LKEMLDEVYK NYNSLYRQLA 180 LMQQQQNIPN KAIEGKPIET QLQDGVNVPR QFIGLAGPSE AEDVSNSSSE ERTRSGALPV 240 NKVELEGDDD LRGEKRLARE DSAETESNNI WKAPNKLQKV NNSSSQTDQS TEATMRKARV 300 SVRARSEAPM ISDGCQWRKY GQKMAKGNPC PRAYYRCTMA TGCPVRKQVQ RCAEDKSILI 360 TTYEGNHNHP LPPAAVAMAS TTTAAANMLL SGSMASHDGL MNHTNLLARA VLPCSSSMAT 420 ISASAPFPTV TLDLTHTPTQ PPNPFGSPLA RQLTPPQQQM TNLPHGLLPH VIGQALYNQS 480 KFSGVQFSGN VNGSPAAPPP QVLADTVNAI TADPNFTAAL ATVISSMFNG SSVGDGEGNR 540 KNQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-22 | 298 | 374 | 1 | 76 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00209 | DAP | Transfer from AT1G62300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010533798.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM359564 | 1e-31 | KM359564.1 Chrysanthemum x morifolium WRKY42 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010533798.2 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: WRKY transcription factor 6-like | ||||
Swissprot | Q9C519 | 0.0 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A078FIZ3 | 0.0 | A0A078FIZ3_BRANA; BnaA09g13370D protein | ||||
STRING | XP_010533798.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1057 | 28 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 0.0 | WRKY family protein |