PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010533585.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 323aa    MW: 35211.6 Da    PI: 8.0734
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010533585.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.5e-18133183256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr+++ +g+WvAeIr p +   r r++lg+ +tae Aa a+++a++kl+ge
  XP_010533585.1 133 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTSDTAEAAAYAYDRAANKLRGE 183
                     59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.22E-18132192No hitNo description
SMARTSM003801.7E-34133196IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-29133191IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-20133190IPR016177DNA-binding domain
PROSITE profilePS5103221.865133190IPR001471AP2/ERF domain
PRINTSPR003676.6E-12134145IPR001471AP2/ERF domain
PfamPF008473.8E-12134183IPR001471AP2/ERF domain
PRINTSPR003676.6E-12172192IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MGEKTDVVQV DFYPKIADIR SSLSQIILTG GANTLDSIFS HCTSTSTTAS AGESSPTTAP  60
PPPLGSSVYL RQRDLLHKFY QENNRVPYHT TTTPFYPSDR HDLLFHHMGS TVTAAAFATA  120
AAVAAGEKKK KKLYRGVRQR HWGKWVAEIR LPQNRMRVWL GTSDTAEAAA YAYDRAANKL  180
RGEYARLNFP NLKDPSELLG LADSNKLVAL KSAVDAKIQA ICQRVRRERA KKSAKTTAVK  240
KAEEESPGQL SSPAVTIAGE TYWVSPEMSD DGLLWNSESC SPAVSDDGAT ASTAAAEAAE  300
ADGYLLTRMP SFDPELIWEV LAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-17130190263ATERF1
3gcc_A1e-17130190263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010533585.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2296371e-54KP229637.1 UNVERIFIED: Boehmeria nivea AP2/ERF domain-containing protein-like (ERF14) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010533585.10.0PREDICTED: ethylene-responsive transcription factor ERF061-like isoform X2
RefseqXP_019057638.10.0PREDICTED: ethylene-responsive transcription factor ERF061-like isoform X1
SwissprotQ9C7W21e-102ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLD7KSA81e-104D7KSA8_ARALL; Uncharacterized protein
TrEMBLV4JU681e-104V4JU68_EUTSA; Uncharacterized protein
STRINGXP_010533585.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41742551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.16e-78ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]