PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010533566.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

Nin-like

Protein Properties

Length: 832aa MW: 91921.4 Da PI: 6.2988

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010533566.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	63.7	3.1e-20	569	610	2	43
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkR 43 ek+isle+l++yF++++kdAAk+Lgvc+T++KriCR++GI+R XP_010533566.1 569 EKTISLEVLKRYFAGSLKDAAKSLGVCPTTMKRICRKHGISR 610 79**************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	12.343	554	646	IPR003035	RWP-RK domain
Pfam	PF02042	6.6E-17	571	610	IPR003035	RWP-RK domain
SuperFamily	SSF54277	6.54E-18	733	821	No hit	No description
Gene3D	G3DSA:3.10.20.240	5.8E-22	738	817	No hit	No description
SMART	SM00666	1.2E-20	739	817	IPR000270	PB1 domain
PROSITE profile	PS51745	18.862	739	817	IPR000270	PB1 domain
Pfam	PF00564	1.4E-15	740	816	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 832 aa Download sequence Send to blast
MELEDLDLGD CWPLDQVTFA STLRSPLFFS SSDQPCSPLW SFSDTASGDA STLFSASAAG 60 PPPRFPDHPV LLACTPSSET ENAKESSDNR IAPPFWGRMP LENPDSYCAI KARMGQALRY 120 LKESTGQHVL AQVWAPVENS GRYVLTTSGQ PFVLGPNSNG LNQYRMVSLT YMFSVDSEMD 180 GELGLPGRVF RKKLPEWTPN VQYYSSKEFS RLGHALLYNV QGTLALPVFE PYMQLCVGVV 240 ELIMTSPKIN YAPEVEKVCK ALEAVNLKTS EILSHETTQI CNEGRQNALA EILEILTVVC 300 ETYKLPLAQT WVPCRHRSVL ANGGGFKKNC SSFDGSCMGK VCMSTSDLAF YIVDAHMWGF 360 RDACVEHHLQ KGQGVAGRAF LSGSICFCRD STRFCKTDYP LVHYARMFKL TSCFAVCLQS 420 SHTGDDEYVL EFFLPPAITG KVEQDCVLGS LLATMKQHFS SLKVASGIGL CENEVSVEIV 480 QAAEDGTVYS ILEHIQIRQS AKSTPSSKND LQLNAPGEKL FLDTEPMDNS TNLIDSNSNA 540 GDFESCETPS PLLEPKTTKK SERKRGKTEK TISLEVLKRY FAGSLKDAAK SLGVCPTTMK 600 RICRKHGISR XXXXXXXNCR RSLTRLKHVI DSVQGAEGAI DLTSLSPRPL PVVVGSVSWS 660 PHLNTNTRQH VSPTESQQPK NGWQGCRLPG SYVQDVKIET RDAEDSAGSS TFRQTPLEDT 720 SSSKEASNIW TTNPPRNKQV SIKAAYREDI IRFKIGTNSG IMEVKEEVGK RLKLEVGTFE 780 VKYLDDDKEW VSVSCDGDMR ECLETSTSTV RLSVHDVTPH FGSSCESSEH LL

Sequence ? help Back to Top

Protein Sequence Length: 832 aa Download sequence Send to blast

MELEDLDLGD CWPLDQVTFA STLRSPLFFS SSDQPCSPLW SFSDTASGDA STLFSASAAG  60
PPPRFPDHPV LLACTPSSET ENAKESSDNR IAPPFWGRMP LENPDSYCAI KARMGQALRY  120
LKESTGQHVL AQVWAPVENS GRYVLTTSGQ PFVLGPNSNG LNQYRMVSLT YMFSVDSEMD  180
GELGLPGRVF RKKLPEWTPN VQYYSSKEFS RLGHALLYNV QGTLALPVFE PYMQLCVGVV  240
ELIMTSPKIN YAPEVEKVCK ALEAVNLKTS EILSHETTQI CNEGRQNALA EILEILTVVC  300
ETYKLPLAQT WVPCRHRSVL ANGGGFKKNC SSFDGSCMGK VCMSTSDLAF YIVDAHMWGF  360
RDACVEHHLQ KGQGVAGRAF LSGSICFCRD STRFCKTDYP LVHYARMFKL TSCFAVCLQS  420
SHTGDDEYVL EFFLPPAITG KVEQDCVLGS LLATMKQHFS SLKVASGIGL CENEVSVEIV  480
QAAEDGTVYS ILEHIQIRQS AKSTPSSKND LQLNAPGEKL FLDTEPMDNS TNLIDSNSNA  540
GDFESCETPS PLLEPKTTKK SERKRGKTEK TISLEVLKRY FAGSLKDAAK SLGVCPTTMK  600
RICRKHGISR XXXXXXXNCR RSLTRLKHVI DSVQGAEGAI DLTSLSPRPL PVVVGSVSWS  660
PHLNTNTRQH VSPTESQQPK NGWQGCRLPG SYVQDVKIET RDAEDSAGSS TFRQTPLEDT  720
SSSKEASNIW TTNPPRNKQV SIKAAYREDI IRFKIGTNSG IMEVKEEVGK RLKLEVGTFE  780
VKYLDDDKEW VSVSCDGDMR ECLETSTSTV RLSVHDVTPH FGSSCESSEH LL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010533566.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010533566.1	0.0	PREDICTED: protein NLP6
Swissprot	Q8RWY4	0.0	NLP6_ARATH; Protein NLP6
TrEMBL	V4JU57	0.0	V4JU57_EUTSA; Uncharacterized protein
STRING	XP_010533566.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2507	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	0.0	Nin-like family protein

Publications ? help Back to Top
Liseron-Monfils C, et al. Nitrogen transporter and assimilation genes exhibit developmental stage-selective expression in maize (Zea mays L.) associated with distinct cis-acting promoter motifs. Plant Signal Behav, 2014. [PMID:24270626] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968]