PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010533558.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

Dof

Protein Properties

Length: 327aa MW: 35378.8 Da PI: 7.0844

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010533558.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.1	1.9e-38	42	101	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 k++al+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lr +PvGgg+rknk+s XP_010533558.1 42 KDQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRSIPVGGGSRKNKRS 101 7899******************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-27	32	94	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.9E-33	43	100	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.817	46	100	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	48	84	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MNTAQWPHEI VVKPIDEIVT NTCLKPTQPT QTAAERQTRP QKDQALNCPR CNSTNTKFCY 60 YNNYSLTQPR YFCKTCRRYW TEGGSLRSIP VGGGSRKNKR SFSSSSNSSS SSSPSSPRKH 120 LSVSTTQTTG TNPKITNAQE DKGLNLAFSQ GIGNAHEAQD LNLAFSQGFV DGHDSGSEFL 180 QMPIMKNPPI SSSSGLSSAS SCSTFMALPT AHDPSVYTAA VSGFGLNYPP MQEFMRPALG 240 FSLDPDDPLN REDGSNATNT SGRLLFPFEN LKLPVSSSST NSGSGGGNGI DNHHRHDHRG 300 SIDEHEKEEE ADHSGGFWTG MLGGGSW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00210	DAP	Transfer from AT1G64620	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010533558.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010533558.1	0.0	PREDICTED: dof zinc finger protein DOF1.8-like
Swissprot	Q84JQ8	1e-105	DOF18_ARATH; Dof zinc finger protein DOF1.8
TrEMBL	D7KS75	1e-105	D7KS75_ARALL; Uncharacterized protein
STRING	XP_010533558.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14932	17	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64620.1	1e-103	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Tian C, et al. An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation. Mol. Syst. Biol., 2014. 10: p. 755 [PMID:25358340]