PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010533399.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | bZIP | ||||||||
Protein Properties | Length: 326aa MW: 35475.7 Da PI: 7.1714 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 41.6 | 2.8e-13 | 246 | 304 | 2 | 60 |
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 ++ +r +r +kNRe+A rsR+RK+a++ eLe + +Le+eN++L ke e +ke k XP_010533399.1 246 AAAQRHKRTIKNRESAARSRERKQAYQLELESLASKLEEENEQLSKEKAERTKERHKKL 304 5789****************************************988766666665544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.3E-10 | 242 | 301 | No hit | No description |
SMART | SM00338 | 5.8E-6 | 245 | 309 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.8E-12 | 246 | 306 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.645 | 247 | 299 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 3.06E-15 | 249 | 295 | No hit | No description |
SuperFamily | SSF57959 | 2.25E-8 | 250 | 300 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 252 | 267 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MASSKVMPSS NSRNSGLSRR NSSSVFSSPS VRSHQLKRDS SADRSRLSGV YDRLNNGFGS 60 TITVDGILRD VYGTDHPAVA AESTLSDASI SLMDPPAPGL VEIAVNVDRS GHGGSGGGMS 120 VTETQGKSVD EVWSEIVSGE RKEMKEEAQD EIMTLEDFLA KAAVDDTVGT AEWEDMDAKI 180 PPERLGGGGC AFDPVPHKPL QMIDNVEGTI VGFGNGLDVY GGGGVGGRGG SRGKRARMIM 240 EPLDKAAAQR HKRTIKNRES AARSRERKQA YQLELESLAS KLEEENEQLS KEKAERTKER 300 HKKLMERVIP AVEKPRLLRR VRSLEW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010533399.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010533399.1 | 0.0 | PREDICTED: G-box-binding factor 4-like isoform X2 | ||||
Swissprot | P42777 | 3e-62 | GBF4_ARATH; G-box-binding factor 4 | ||||
TrEMBL | E4MY82 | 1e-99 | E4MY82_EUTHA; mRNA, clone: RTFL01-45-A18 | ||||
TrEMBL | V4LQ58 | 1e-99 | V4LQ58_EUTSA; Uncharacterized protein | ||||
STRING | XP_010533398.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44080.1 | 6e-68 | bZIP family protein |